YRC Public Data Repository - Protein Structure Prediction

Protein:	YDR379C-A
Organism:	Saccharomyces cerevisiae
Length:	79 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDR379C-A.

Description	E-value	Query Range	Subject Range
gi\|114677073 - gi\|114677073\|ref\|XP_524230.2\| PREDICTED: hypothetical protein [Pan troglodytes]	112.0	[0..4]	[76..665]
SPAC664.12c - LYR family protein SDHF1_SCHPO - Succinate dehydrogenase assembly factor 1, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ...	109.0	[0..5]	[79..3]
gi\|109458504 - gi\|109458504\|ref\|XP_579917.2\| PREDICTED: similar to Feline leukemia virus subgroup C receptor-relate...	108.0	[0..4]	[76..1047]
gi\|18405143, gi\|... - gi\|42571133\|ref\|NP_973640.1\| complex 1 family protein / LVR family protein [Arabidopsis thaliana], g...	104.0	[0..4]	[78..5]
gi\|49643199 - gi\|49643199\|emb\|CAG99151.1\| KLLA0E02619p [Kluyveromyces lactis] gi\|50308127, gi\|... - gi\|50308127\|ref\|XP_454064.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643199\|emb\|CAG9915...	100.0	[0..1]	[79..1]
gi\|50284945, gi\|... - gi\|50284945\|ref\|XP_444901.1\| hypothetical protein CAGL0A03080g [Candida glabrata CBS138], gi\|4952420... gi\|49524203 - gi\|49524203\|emb\|CAG57794.1\| unnamed protein product [Candida glabrata]	93.0	[0..1]	[79..1]
gi\|187950681, gi... - gi\|89057422\|ref\|XP_945291.1\| PREDICTED: hypothetical protein [Homo sapiens], gi\|187951703\|gb\|AAI3751...	91.0	[0..4]	[76..3]
gi\|109124424 - gi\|109124424\|ref\|XP_001100760.1\| PREDICTED: hypothetical protein [Macaca mulatta]	91.0	[0..4]	[76..3]
gi\|44981682 - gi\|44981682\|gb\|AAS51432.1\| ACR206Cp [Ashbya gossypii ATCC 10895] gi\|45185892, gi\|... - gi\|45185892\|ref\|NP_983608.1\| ACR206Cp [Ashbya gossypii ATCC 10895], gi\|44981682\|gb\|AAS51432.1\| ACR20...	89.0	[0..1]	[78..1]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKRLSGLQK EVLHLYRASI RTAHTKPKEN QVNFVNYIHE EFGKYRNLPR KDFTTIEHLL  60
   61 RVGNKKIATF SHPELTNIH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.876	a.7.6	Ribosomal protein S20
View	Download	0.858	a.7.6	Ribosomal protein S20
View	Download	0.836	a.64.1	Saposin
View	Download	0.821	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.821	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.819	a.24.13	Domain of the SRP/SRP receptor G-proteins
View	Download	0.804	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View	Download	0.804	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View	Download	0.792	a.39.1	EF-hand
View	Download	0.606	d.54.1	Enolase N-terminal domain-like
View	Download	0.578	a.159.4	Description not found.
View	Download	0.500	a.159.4	Description not found.
View	Download	0.471	d.54.1	Enolase N-terminal domain-like
View	Download	0.461	a.4.5	"Winged helix" DNA-binding domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits