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View Structure Prediction Details

Protein: ESF1
Organism: Saccharomyces cerevisiae
Length: 628 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ESF1.

Description E-value Query
Range
Subject
Range
SPBC1734.01c - RNA-binding protein
ESF1_SCHPO - Pre-rRNA-processing protein esf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=esf1 PE=1...
569.0 [0..12] [621..22]
gi|145337843, gi... - gi|6714472|gb|AAF26158.1|AC008261_15 hypothetical protein [Arabidopsis thaliana], gi|145337843|ref|N...
553.0 [0..12] [627..33]
ESF1 - ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)
gi|147898033, gi... - gi|208967797|dbj|BAG72544.1| ESF1, nucleolar pre-rRNA processing protein, homolog [synthetic constru...
524.0 [0..6] [592..183]
gi|21483398 - gi|21483398|gb|AAM52674.1| LD23562p [Drosophila melanogaster]
524.0 [0..2] [619..46]
gi|109092936, gi... - gi|109092938|ref|XP_001083582.1| PREDICTED: similar to ABT1-associated protein isoform 2 [Macaca mul...
490.0 [0..6] [592..184]
gi|76632068 - gi|76632068|ref|XP_612766.2| PREDICTED: similar to ABT1-associated protein [Bos taurus]
486.0 [0..9] [600..186]
gi|73991157 - gi|73991157|ref|XP_849212.1| PREDICTED: similar to ABT1-associated protein isoform 2 [Canis familiar...
482.0 [0..7] [600..185]

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Predicted Domain #1
Region A:
Residues: [1-206]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGENPKKEG VDARFAGIYS DPKFKNTKTK DHKIKLDSRF SKKDLEVQHK SKVDKYGRKI  60
   61 KNAQNNRELE DFDKYFEKEA ENDEDSEVNA KTVVDRARGE VPDDYVSSSD EFTSSDSESS 120
  121 GESEVESEEE NEVEIENAKP ESGDISKNLA VVNLDWDHVK SEDLMITFSS FVPKGGKIER 180
  181 VAIYPSEFGK ERMQREEVEG PPKELF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [207-298]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKKNKNKTSK KKKTDDSDSD MDIGIKDLYE EGDADKDVDS RALRQYQLDR LRYYYAIVYC  60
   61 SDTTTSKAIY DNCDGTEYES TANMFDLRYV PD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [299-504]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GMTFDDDVRD ECSILPKNYR PHQFSTDALQ HSSVKLTWDE TPADRVEVAK RAFTQKEIDD  60
   61 MDFKAYLASD SDESDGQVDE EAKNKLKSLV GDFGFNSKKE TPNDEDEEVD MEITFTPALE 120
  121 GGNEKSSEDK EETTIEKIRR KEKERRKARK QKVKELKQQS EKDKKSKLKS VNKKHTNDEE 180
  181 EIEKNAKSKA ELELLMDDDD DTETQG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [505-628]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TINNKAHFNM NEILRSEKEK HKKGRYQKKE RIVEDTFTPD LEDPRFKEVF EDHDFAIDPT  60
   61 QPEFKGTQAM SKILKERSKR VKNKKRKLGG SENNMTNNAD DNEDIGNLVN KLKKKSKSSK 120
  121 KVKV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle