YRC Public Data Repository - Protein Structure Prediction

Protein:	YDR357C
Organism:	Saccharomyces cerevisiae
Length:	122 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDR357C.

Description	E-value	Query Range	Subject Range
gi\|44983887, gi\|... - gi\|45190845\|ref\|NP_985099.1\| AER242Cp [Ashbya gossypii ATCC 10895], gi\|44983887\|gb\|AAS52923.1\| AER24... BL1S4_ASHGO - Biogenesis of lysosome-related organelles complex 1 subunit CNL1 OS=Ashbya gossypii (strain ATCC 108...	112.0	[0..1]	[115..1]
gi\|49644058 - gi\|49644058\|emb\|CAH00010.1\| KLLA0E21495p [Kluyveromyces lactis] BL1S4_KLULA - Biogenesis of lysosome-related organelles complex 1 subunit CNL1 OS=Kluyveromyces lactis (strain ATC...	107.0	[0..14]	[111..19]
gi\|49524180 - gi\|49524180\|emb\|CAG57771.1\| unnamed protein product [Candida glabrata] BL1S4_CANGA - Biogenesis of lysosome-related organelles complex 1 subunit CNL1 OS=Candida glabrata (strain ATCC 20...	98.0	[0..16]	[108..5]
gi\|50427229, gi\|... - gi\|50427229\|ref\|XP_462227.1\| hypothetical protein DEHA0G16808g [Debaryomyces hansenii CBS767], gi\|49...	54.0	[0..10]	[116..16]
gi\|46443425, gi\|... - gi\|68469439\|ref\|XP_721234.1\| hypothetical protein CaO19.10525 [Candida albicans SC5314], gi\|68468893... orf19.10525, orf... - orf19.3007 CGDID:CAL0001332 Assembly 19, Contig19-10163 (158525, 159001) CDS, translated using codon...	52.0	[0..2]	[114..44]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDNSSHSRE SASAGDDPLG IDKLTVDYDY LLYKMRDYVQ SIQLDTTELC KKQNEVMVNG  60
   61 IIENTIDKNI AKFKELLEKC DTLENHYEML NQLAIITDTF KERIAEAVNN YNSLKKGASK 120
  121 SK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.923	a.48.5	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits