YRC Public Data Repository - Protein Structure Prediction

Protein:	YDR352W
Organism:	Saccharomyces cerevisiae
Length:	317 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDR352W.

Description	E-value	Query Range	Subject Range
gi\|15235292, gi\|... - pir\|\|T04894 hypothetical protein F18F4.200 - Arabidopsis thaliana, gi\|7268805\|emb\|CAB79010.1\| putat...	305.0	[0..11]	[297..6]
YPQ1_YEAST - Probable vacuolar amino acid transporter YPQ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288... YOL092W - Putative protein of unknown function; predicted to contain six transmembrane domains and is 58% simi...	260.0	[0..26]	[282..28]
CTNS_MOUSE - Cystinosin OS=Mus musculus GN=Ctns PE=1 SV=1	242.0	[0..14]	[288..129]
gi\|109112775 - gi\|109112775\|ref\|XP_001089732.1\| PREDICTED: cystinosis, nephropathic isoform 2 [Macaca mulatta]	242.0	[0..14]	[288..129]
gi\|109491251 - gi\|109491251\|ref\|XP_001080248.1\| PREDICTED: similar to Cystinosin [Rattus norvegicus]	240.0	[0..14]	[288..154]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCSNGIWPT VSNLCGSLSF FTSVISLFPQ IIETYRDKSV DGLSPYFLLA WLCGDITSLI  60
   61 GAKLTGQLLF QILLAIYFLL NDSFVCGQYY YYGVLHENKL ATVGHEPKPL LPELVENGEL 120
  121 LREEEDMIQG GSSAE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.975	N/A	N/A	a.24.9	alpha-catenin/vinculin

Predicted Domain #2

Region A:
Residues: [136-317]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPRSSRRRSA ITAALAIAHT ISTASAYPLN VGSTQSQVGP PGDGKNSQLG TILSWIGASF  60
   61 YVGARIPQLI KNYNRKSTDG LSPFLFATTL LCNITYNLSI FTSCRFLDNQ NKREFIVNEL 120
  121 PFIFGSAGTI AFDLIYFYQY YILYATDMQL RELERELYSP EEDSAAQLVT ERTSLLSGET 180
  181 QT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits