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View Structure Prediction Details

Protein: MRP1
Organism: Saccharomyces cerevisiae
Length: 321 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRP1.

Description E-value Query
Range
Subject
Range
gi|171969 - gi|171969|gb|AAA74727.1| mitochondrial ribosomal protein (MRP1) [Saccharomyces cerevisiae]
3.0E-71 [1..321] [1..321]
SODM_HORSE - Superoxide dismutase [Mn], mitochondrial OS=Equus caballus GN=SOD2 PE=2 SV=1
3.0E-59 [133..314] [33..222]
gi|124126863, gi... - gi|61360285|gb|AAX41838.1| superoxide dismutase 2 mitochondrial [synthetic construct], gi|61360280|g...
gi|56204992, gi|... - gi|67782307|ref|NP_001019636.1| manganese superoxide dismutase isoform A precursor [Homo sapiens], g...
1.0E-57 [116..314] [16..222]
gi|447739 - gi|447739|prf||1915304A nylB upstream ORF
2.0E-57 [131..313] [8..203]
SODM_GEOSE - Superoxide dismutase [Mn] OS=Geobacillus stearothermophilus GN=sodA PE=1 SV=2
2.0E-57 [131..313] [8..202]
gi|832851 - gi|832851|gb|AAB60902.1| manganese superoxide dismutase
3.0E-57 [116..314] [16..222]
gi|498260 - gi|498260|gb|AAA30655.1| manganous superoxide dismutase
4.0E-57 [131..314] [40..231]

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Predicted Domain #1
Region A:
Residues: [1-90]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRFTGARAI RKYSTRYALE HLKEGAPLKG LFSIEGLQKA WFDRVKYLDA KLNDCTNEAQ  60
   61 QKPLETLIHE NSKSASKKHI VNYASSLYNL 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 52.154902
Match: 3mdsA_
Description: Mn superoxide dismutase (MnSOD)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [91-241]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KFSMSSLQGC IRTPPEECPR LGPEALLQTP DFNRTISNEP LTTGNERLQA ALISSFGSLM  60
   61 EFRTLLINSN LAISGDGFTW LVARRQLDKR AMRNDMPNRD IEYDKLFILN TYNAGTPFNF 120
  121 STSGVMNELN NQYTNMEKQR AKEAGNLEDS E

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 52.154902
Match: 3mdsA_
Description: Mn superoxide dismutase (MnSOD)
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [242-321]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAKQAKTKF IYETQQKGFS GKEVSYIPLL AIDASPKTWL TDYGVFGKRE YLERVWDSIE  60
   61 WKIVESRLPQ RTKIQAFNTL 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 57.0
Match: 1lusA_
Description: No description for 1lusA_ was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle