YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPS28
Organism:	Saccharomyces cerevisiae
Length:	286 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPS28.

Description	E-value	Query Range	Subject Range
MRPS28 - Mitochondrial ribosomal protein of the small subunit RT28_YEAST - 37S ribosomal protein S28, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN... gi\|190404722 - gi\|190404722\|gb\|EDV07989.1\| 40S ribosomal protein S28, mitochondrial precursor [Saccharomyces cerevi... gi\|207346440 - gi\|207346440\|gb\|EDZ72933.1\| YDR337Wp-like protein [Saccharomyces cerevisiae AWRI1631]	0.0	[1..286]	[1..286]
RT28_SCHPO - Probable 37S ribosomal protein S28, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... mrps28 - mitochondrial ribosomal protein subunit S28	4.0E-58	[17..244]	[22..285]
gi\|18394286, gi\|... - gi\|8927660\|gb\|AAF82151.1\|AC034256_15 Contains similarity to an unknown protein T21F11.5 gi\|6730725 f...	1.0E-39	[93..238]	[265..413]
gi\|85082073 - gi\|85082073\|ref\|XP_956841.1\| hypothetical protein NCU03394 [Neurospora crassa OR74A] gi\|18376366, gi\|... - gi\|32404078\|ref\|XP_322652.1\| predicted protein [Neurospora crassa], gi\|28917920\|gb\|EAA27605.1\| conse...	3.0E-39	[28..239]	[35..312]
MRPS15 - mitochondrial ribosomal protein S15	6.0E-34	[116..236]	[70..187]
gi\|12833594 - gi\|12833594\|dbj\|BAB22586.1\| unnamed protein product [Mus musculus]	3.0E-29	[125..236]	[80..188]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-28	[118..236]	[92..227]

Back

Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIVGRNAIL NLRISLCPLF MGKRSFVSSP VSNSAKAVKF LKAQRRKQKN EAKQATLKAS  60
   61 TDKVDPVLGR ADTPFITRIM AELKEPLVLS KGYNIEEVDK FLAAIESAKR ERAELSGLNT 120
  121 EVVGIEDIEK LE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [133-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DRREAILRIL SMRNSENKNA IKMAVELARK EFERFPGDTG SSEVQAACMT VRIQNMANHI  60
   61 KEHRKDFANT RNLRILVQQR QAILRYLKRD NPEKYYWTIQ KLGLNDAAIT DEFNMDRRYM 120
  121 QDYEFFGDKI LIRDSKKVAN QKRKEIRKQK RATF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	134.156545
Match:	1eg0F_
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits