| Protein: | PIB1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 286 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PIB1.
| Description | E-value | Query Range |
Subject Range |
|
|
158.0 | [0..1] | [286..1] |
|
|
125.0 | [0..23] | [282..151] |
|
|
123.0 | [0..23] | [282..22] |
|
|
123.0 | [0..23] | [284..22] |
|
|
123.0 | [0..23] | [286..22] |
|
|
123.0 | [0..12] | [264..1027] |
|
|
123.0 | [0..23] | [282..22] |
|
Region A: Residues: [1-89] |
1 11 21 31 41 51
| | | | | |
1 MVIKEDCINN LARWQADEEA HSCFQCKTNF SFLVRRHHCR CCGRIFCSSC TENFVNYNKK 60
61 RVHALQKKNS DVESPPYRTC NECYDNLLH
|
| Detection Method: |  |
| Confidence: | 77.68867 |
| Match: | 1jocA |
| Description: | Eea1; Eea1 homodimerisation domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [90-159] |
1 11 21 31 41 51
| | | | | |
1 LNLLVSSTNR DVRLSQTSVP PNALALSAPD SNTDEDAEIL EDSVDQSGTA CRSEESSQNE 60
61 EDHFCPICNS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.516 | a.4.1 | Homeodomain-like |
| View | Download | 0.459 | a.64.1 | Saposin |
| View | Download | 0.459 | a.64.1 | Saposin |
| View | Download | 0.395 | a.217.1 | Description not found. |
| View | Download | 0.372 | d.67.4 | Description not found. |
| View | Download | 0.355 | d.68.3 | SirA-like |
| View | Download | 0.355 | d.68.3 | SirA-like |
| View | Download | 0.340 | d.15.1 | Ubiquitin-like |
| View | Download | 0.315 | a.5.2 | UBA-like |
|
Region A: Residues: [160-286] |
1 11 21 31 41 51
| | | | | |
1 DLTQFPDEEE TRKHVEDCIQ RAENAQQHTN TSDAADDSVK ESPAFQNRML VYKISPNTTD 60
61 NAIKECPICF ENMEPGEKVG RLECLCVFHY KCIKNWFHKR AQMTAAQKGN GHAFVKRNFC 120
121 PFHDAVF
|
| Detection Method: | |
| Confidence: | 3.522879 |
| Match: | 1chcA |
| Description: | STRUCTURE OF THE C3HC4 DOMAIN BY 1H-NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; A NEW STRUCTURAL CLASS OF ZINC-FINGER |
Matching Structure (courtesy of the PDB): |
|
