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View Structure Prediction Details

Protein: SUM1
Organism: Saccharomyces cerevisiae
Length: 1062 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SUM1.

Description E-value Query
Range
Subject
Range
gi|1003013 - gi|1003013|gb|AAB38222.1| Sum1p
0.0 [21..1062] [8..1048]
gi|15277229 - gi|15277229|dbj|BAB63322.1| KIAA0170 [Homo sapiens]
0.001 [190..406] [1354..1570]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.002 [203..384] [206..394]

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Predicted Domain #1
Region A:
Residues: [1-189]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSENTTAPSD NITNEQRLPS GPKDDVDTLA LTSAQNQANS LRKLDTDANA KALPSITDIP  60
   61 VSDDSDIKRQ VGSGFGSNPL HIKDSEAFPH SSIEALKEGM DKVTKQCNDL KTALLSKDTS 120
  121 LTDSVQDLFN SLKVLSHNQS VLENKLDDVM KNQVNTDILV NNLNERLNKL STMLQNTSKV 180
  181 NHSNLLIEN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [190-411]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSNNTSSQHN TSSSRRGPGR PRKDASTSTM NKLVSNAASV NLKSASNQGA PFSPVNITLP  60
   61 TAVVQTSKSK RYFVEPSTKQ ESLLLSAPSS SRDDADMSLT SVPQRTNNEN GKERPSTANS 120
  121 SSITPTPVTP NNLIQIKRKR GRPPKKRTVE TMISNSTDTI DKSDASNRIK NEIPINSLLP 180
  181 SSKFHQIPSS PSNPVSQPAP VRTSRSATQE IDIKSLELAS LI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [412-1062]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STNGDPNAED SNTTDTVHNN VEGKVNVEEN KTEKEKIITI KSSSENSGNN TTNNNNTDNV  60
   61 IKFSANSDIN SDIRRLMVND QFSLSYDASG NITVKLPPVS SPAAATAAAA AAVTSEMNRQ 120
  121 QRELDKRRDS REKMLVNMKY NDRDKAKSFM ESNKKLLKAM KEEERRKRMT SIIHDNHLNL 180
  181 NLNEISTRSK IKSAEKPTTK GSSMSPKPRS ASISGISDHQ QEGYQPLEQE KLVDIDNEGS 240
  241 NANSDSLKMG LTISAADTVH KVGIQSMLNS GEEAITKENA EYERKTPGDE ETTTFVPLEN 300
  301 SQPSDTIRKR TAGDDGALDQ TENTSISPKK RRTEDHTKGE EDEGERGVGN SGTLATVENV 360
  361 SGDISADLSK GTSSIHNDTE SANDSSNGNG NLGLGTESRN TLLTATPIEL ICREGFFYRR 420
  421 DIPDVPITTG AYLEFKFKAK EEELINSSIN EEDYAAKSKH EKMNAHFFKP DIQEETELAF 480
  481 EILSKTTLTE KYVNSLEYFL MEFRWENKLV GLGLKLRESK RTWQRRKALF ALFEFWRDQS 540
  541 RDKRRFHNYT ILHAVKEMEN YRIFINRSVS WFYNHITLLK MILYDLCDNV TTQWREWMFP 600
  601 HNETLPALGQ DGINEDNLNE TIDNMLIFDF LDDGSENNQV KYSRIIPPDI R

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle