| Protein: | LYS4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 693 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LYS4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [2..693] | [31..895] |
|
|
0.0 | [2..693] | [31..895] |
|
|
0.0 | [2..693] | [27..887] |
|
|
0.0 | [2..693] | [27..887] |
|
|
0.0 | [2..693] | [31..895] |
|
|
0.0 | [2..693] | [27..897] |
|
|
0.0 | [2..693] | [31..895] |
|
|
0.0 | [2..693] | [53..916] |
|
Region A: Residues: [1-505] |
1 11 21 31 41 51
| | | | | |
1 MLRSTTFTRS FHSSRAWLKG QNLTEKIVQS YAVNLPEGKV VHSGDYVSIK PAHCMSHDNS 60
61 WPVALKFMGL GATKIKNPSQ IVTTLDHDIQ NKSEKNLTKY KNIENFAKKH HIDHYPAGRG 120
121 IGHQIMIEEG YAFPLNMTVA SDSHSNTYGG LGSLGTPIVR TDAAAIWATG QTWWQIPPVA 180
181 QVELKGQLPQ GVSGKDIIVA LCGLFNNDQV LNHAIEFTGD SLNALPIDHR LTIANMTTEW 240
241 GALSGLFPVD KTLIDWYKNR LQKLGTNNHP RINPKTIRAL EEKAKIPKAD KDAHYAKKLI 300
301 IDLATLTHYV SGPNSVKVSN TVQDLSQQDI KINKAYLVSC TNSRLSDLQS AADVVCPTGD 360
361 LNKVNKVAPG VEFYVAAASS EIEADARKSG AWEKLLKAGC IPLPSGCGPC IGLGAGLLEP 420
421 GEVGISATNR NFKGRMGSKD ALAYLASPAV VAASAVLGKI SSPAEVLSTS EIPFSGVKTE 480
481 IIENPVVEEE VNAQTEAPKQ SVEIL
|
|
Region B: Residues: [527-538] |
1 11 21 31 41 51
| | | | | |
1 DGIYPGKYTY QD
|
| Detection Method: |  |
| Confidence: | 1295.228787 |
| Match: | 5acn__ |
| Description: | Aconitase A, C-terminal domain; Aconitase A, N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| 3-isopropylmalate dehydratase activity | 11.6597692115322 | bayes_pls_golite062009 |
| aconitate hydratase activity | 5.86356477922338 | bayes_pls_golite062009 |
| catalytic activity | 2.4040324437254 | bayes_pls_golite062009 |
| carbon-oxygen lyase activity | 2.08349115784849 | bayes_pls_golite062009 |
| hydro-lyase activity | 2.04845291489052 | bayes_pls_golite062009 |
| lyase activity | 2.0080619912194 | bayes_pls_golite062009 |
| RNA binding | 1.22007129202809 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.952569345633996 | bayes_pls_golite062009 |
| nucleic acid binding | 0.290042934134994 | bayes_pls_golite062009 |
| iron-sulfur cluster binding | 0.239736179000069 | bayes_pls_golite062009 |
| metal cluster binding | 0.239736179000069 | bayes_pls_golite062009 |
|
Region A: Residues: [506-526] |
1 11 21 31 41 51
| | | | | |
1 EGFPREFSGE LVLCDADNIN T
|
|
Region B: Residues: [539-693] |
1 11 21 31 41 51
| | | | | |
1 DVPKEKMAQV CMENYDAEFR TKVHPGDIVV SGFNFGTGSS REQAATALLA KGINLVVSGS 60
61 FGNIFSRNSI NNALLTLEIP ALIKKLREKY QGAPKELTRR TGWFLKWDVA DAKVVVTEGS 120
121 LDGPVILEQK VGELGKNLQE IIVKGGLEGW VKSQL
|
| Detection Method: | |
| Confidence: | 1295.228787 |
| Match: | 5acn__ |
| Description: | Aconitase A, C-terminal domain; Aconitase A, N-terminal domain |
| Matching Structure (courtesy of the PDB): |
|
