| Protein: | RTN1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 295 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RTN1.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-82 | [1..295] | [1..295] |
|
|
2.0E-65 | [5..207] | [70..270] |
|
|
3.0E-61 | [5..206] | [79..278] |
|
|
5.0E-50 | [19..230] | [271..471] |
|
Region A: Residues: [1-219] |
1 11 21 31 41 51
| | | | | |
1 MSASAQHSQA QQQQQQKSCN CDLLLWRNPV QTGKYFGGSL LALLILKKVN LITFFLKVAY 60
61 TILFTTGSIE FVSKLFLGQG LITKYGPKEC PNIAGFIKPH IDEALKQLPV FQAHIRKTVF 120
121 AQVPKHTFKT AVALFLLHKF FSWFSIWTIV FVADIFTFTL PVIYHSYKHE IDATVAQGVE 180
181 ISKQKTQEFS QMACEKTKPY LDKVESKLGP ISNLVKSKT
|
| Detection Method: |  |
| Confidence: | 78.283997 |
| Match: | PF02453 |
| Description: | Reticulon |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [220-295] |
1 11 21 31 41 51
| | | | | |
1 APVSSTAGPQ TASTSKLAAD VPLEPESKAY TSSAQVMPEV PQHEPSTTQE FNVDELSNEL 60
61 KKSTKNLQNE LEKNNA
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.527 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.376 | a.4.1 | Homeodomain-like |
| View | Download | 0.506 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.360 | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
| View | Download | 0.355 | a.46.1 | Methionine synthase domain |
| View | Download | 0.344 | a.64.1 | Saposin |
| View | Download | 0.343 | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.313 | a.4.1 | Homeodomain-like |
| View | Download | 0.299 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.281 | a.60.8 | HRDC-like |
| View | Download | 0.257 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.242 | a.38.1 | Helix-loop-helix DNA-binding domain |
| View | Download | 0.203 | a.76.1 | Iron-dependent represor protein, dimerization domain |
