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View Structure Prediction Details

Protein: CRF1
Organism: Saccharomyces cerevisiae
Length: 467 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CRF1.

Description E-value Query
Range
Subject
Range
gi|190404826 - gi|190404826|gb|EDV08093.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
CRF1_YEAST - Transcription factor CRF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CRF1 PE=1 SV=1
CRF1 - Transcriptional corepressor involved in repression of ribosomal protein (RP) gene transcription via ...
0.0 [1..467] [1..467]

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Predicted Domain #1
Region A:
Residues: [1-202]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLSAPVNST VRRKPHSPNK KKPKETGTAA SFSSSSSTVV LSSNNDGSFD ALWDPSISKA  60
   61 SDFESSYISA KRLKPESSNR QKKKNSYKYS REENTNEVEE KTSLGSSSKT EADNIFNDQL 120
  121 TSAGNTTYVS NKRDVNFGAN SAVVLLGLPT SKSESHRQYH SPSASTTNED EEDIGVDILV 180
  181 DNHIDSCETV SINNNRGITH QY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [203-467]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PETESDVDFD EAVILTPMDG TDKGVKNPRP LEKKYSSSCF EDRTPLNLDD GHFSECNHFS  60
   61 TLDVSSFFHL NEHVHKIDEV ELDGPDRTFS LDNVAINTRK KDIDCLYNSS REDLSNLTCS 120
  121 SEGPRNDSYD SDYNIDEVTY RDDESTDEDE SLPTPDRKRK KIGHKACEIL DSKRIGIKVP 180
  181 KLYVWSLSDK PFSVIDGLCT KSLYPLSDDI NTPESLSSCS SSVSSRENQK GDATFDNDAM 240
  241 IADLLNIGGL EVEKASNGHI ELIGE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle