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View Structure Prediction Details

Protein: RAD9
Organism: Saccharomyces cerevisiae
Length: 1309 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAD9.

Description E-value Query
Range
Subject
Range
RAD9_YEAST - DNA repair protein RAD9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD9 PE=1 SV=2
RAD9 - DNA damage-dependent checkpoint protein, required for cell-cycle arrest in G1/S, intra-S, and G2/M; ...
0.0 [1..1309] [1..1309]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
8.0E-45 [998..1132] [539..661]
RHP9_SCHPO - DNA repair protein crb2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=crb2 PE=1 SV=1
crb2 - DNA repair protein RAD9 homolog, Rhp9
1.0E-44 [998..1132] [539..661]
gi|1054877 - gi|1054877|gb|AAC43483.1| glucosyltransferase [Streptococcus gordonii]
0.002 [458..645] [48..241]

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Predicted Domain #1
Region A:
Residues: [1-991]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGQLVQWKS SPDRVTQSAI KEALHSPLAD GDMNEMNVPV DPLENKVNST NIIEGSPKAN  60
   61 PNPVKFMNTS EIFQKSLGLL DESPRHDDEL NIEVGDNDRP NANILHNERT PDLDRIANFF 120
  121 KSNRTPGKEN LLTKYQSSDL EDTPLMLRKK MTFQTPTDPL EQKTFKKLKS DTGFCYYGEQ 180
  181 NDGEENASLE VTEADATFVQ MAERSADNYD CALEGIVTPK RYKDELSKSG GMQDERVQKT 240
  241 QIMISAESPN SISSYDKNKI TGNGRTTRNV NKVFNNNEDN IGAIEEKNPV KKKSENYSSD 300
  301 DLRERNNQII QSNESEEINE LEKNLNVSGR ENDVNNLDID INSAVSGTPS RNNAEEEMYS 360
  361 SESVNNREPS KKWIFRYSKD KTENNSNRST QIVNNPRTQE MPLDSISIDT QPLSKSFNTE 420
  421 TNNELETQII VSSLSQGISA QKGPVFHSTG QTEEIKTQII NSPEQNALNA TFETPVTLSR 480
  481 INFEPILEVP ETSSPSKNTM SKPSNSSPIP KEKDTFNIHE REVETNNVFS NDIQNSSNAA 540
  541 TRDDIIIAGS SDFNEQKEIT DRIYLQLSGK QISDSGSDET ERMSPNELDT KKESTIMSEV 600
  601 ELTQELPEVE EQQDLQTSPK KLVVEEETLM EIKKSKGNSL QLHDDNKECN SDKQDGTESL 660
  661 DVALIEHESK GQSSELQKNL MQLFPSESQE IIQNRRTIKR RQKDTIEIGE EEENRSTKTS 720
  721 PTKHLKRNSD LDAASIKREP SCSITIQTGE TGSGKDSKEQ SYVFPEGIRT ADNSFLSKDD 780
  781 IIFGNAVWCQ YTWNYKFYPG ILLEVDTNQD GCWIYFETGR SLTKDEDIYY LDIRIGDAVT 840
  841 FDGNEYVVVG LECRSHDLNI IRCIRGYDTV HLKKKNASGL LGKRTLIKAL SSISLDLSEW 900
  901 AKRAKIILED NEKNKGDAYR YLRHPIRGRK SMTNVLSPKK HTDDEKDINT HTEVYNNEIE 960
  961 SSSEKKEIVK KDSRDALAEH AGAPSLLFSS G

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [992-1135]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EIRTGNVFDK CIFVLTSLFE NREELRQTIE SQGGTVIESG FSTLFNFTHP LAKSLVNKGN  60
   61 TDNIRELALK LAWKPHSLFA DCRFACLITK RHLRSLKYLE TLALGWPTLH WKFISACIEK 120
  121 KRIVPHLIYQ YLLPSGESFR LSLD

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 11.031517
Match: PF00533
Description: BRCA1 C Terminus (BRCT) domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [1136-1309]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPSKGGIIKS NNIFSFYTQF LRGSNLRDQI CGVKKMLNDY IVIVWGRSEL DSFVKFAFAC  60
   61 LSAGRMLTID LPNIDVDDTE PLLNALDSLV PRIGSELSNR KLKFLIYANE NNGKSQMKLL 120
  121 ERLRSQISLK FKKFNYIFHT ESKEWLIQTI INEDTGFHDD ITDNDIYNTI SEVR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [366-505]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NREPSKKWIF RYSKDKTENN SNRSTQIVNN PRTQEMPLDS ISIDTQPLSK SFNTETNNEL  60
   61 ETQIIVSSLS QGISAQKGPV FHSTGQTEEI KTQIINSPEQ NALNATFETP VTLSRINFEP 120
  121 ILEVPETSSP SKNTMSKPSN 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [506-761]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSPIPKEKDT FNIHEREVET NNVFSNDIQN SSNAATRDDI IIAGSSDFNE QKEITDRIYL  60
   61 QLSGKQISDS GSDETERMSP NELDTKKEST IMSEVELTQE LPEVEEQQDL QTSPKKLVVE 120
  121 EETLMEIKKS KGNSLQLHDD NKECNSDKQD GTESLDVALI EHESKGQSSE LQKNLMQLFP 180
  181 SESQEIIQNR RTIKRRQKDT IEIGEEEENR STKTSPTKHL KRNSDLDAAS IKREPSCSIT 240
  241 IQTGETGSGK DSKEQS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [762-911]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YVFPEGIRTA DNSFLSKDDI IFGNAVWCQY TWNYKFYPGI LLEVDTNQDG CWIYFETGRS  60
   61 LTKDEDIYYL DIRIGDAVTF DGNEYVVVGL ECRSHDLNII RCIRGYDTVH LKKKNASGLL 120
  121 GKRTLIKALS SISLDLSEWA KRAKIILEDN 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 82.69897
Match: PF08605.1
Description: No description for PF08605.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [912-988]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKNKGDAYRY LRHPIRGRKS MTNVLSPKKH TDDEKDINTH TEVYNNEIES SSEKKEIVKK  60
   61 DSRDALAEHA GAPSLLF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #8
Region A:
Residues: [989-1309]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSGEIRTGNV FDKCIFVLTS LFENREELRQ TIESQGGTVI ESGFSTLFNF THPLAKSLVN  60
   61 KGNTDNIREL ALKLAWKPHS LFADCRFACL ITKRHLRSLK YLETLALGWP TLHWKFISAC 120
  121 IEKKRIVPHL IYQYLLPSGE SFRLSLDSPS KGGIIKSNNI FSFYTQFLRG SNLRDQICGV 180
  181 KKMLNDYIVI VWGRSELDSF VKFAFACLSA GRMLTIDLPN IDVDDTEPLL NALDSLVPRI 240
  241 GSELSNRKLK FLIYANENNG KSQMKLLERL RSQISLKFKK FNYIFHTESK EWLIQTIINE 300
  301 DTGFHDDITD NDIYNTISEV R

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.44
Match: 1kzyC
Description: 53BP1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle