YRC Public Data Repository - Protein Structure Prediction

Protein:	RAV2
Organism:	Saccharomyces cerevisiae
Length:	351 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAV2.

Description	E-value	Query Range	Subject Range
gi\|207346599 - gi\|207346599\|gb\|EDZ73049.1\| YDR202Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190404844 - gi\|190404844\|gb\|EDV08111.1\| regulator of V-ATPase in vacuolar membrane protein 2 [Saccharomyces cere... gi\|151942184 - gi\|151942184\|gb\|EDN60540.1\| regulator of (H+)-ATPase in vacuolar membrane [Saccharomyces cerevisiae ... RAV2 - Subunit of RAVE (Rav1p, Rav2p, Skp1p), a complex that associates with the V1 domain of the vacuolar ... RAV2_YEAST - Regulator of V-ATPase in vacuolar membrane protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508...	0.0	[1..351]	[1..351]

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Predicted Domain #1

Region A:
Residues: [1-351]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVDLFPNDR FGAEDKYDNF KDAVKECSWL IEEIVKPQLP NIIDNFSKCL EMLESDQIFK  60
   61 MPVSNGIPNE SNKQNDSPTV KGVITRQGQY IVDFHIVVRF PQFQRGKQVM FRMNTGLNFL 120
  121 LIQFSKIMTH LKNILEILNQ LQVATDVSEF VSKFGVAMEL LNHSLILLQN PPRDLVFPED 180
  181 NNFAMKEMFQ DCYSVCESTA HILGLELTLC RNELCIELRN LIKVTKKPWC EIDSKTGRSF 240
  241 CDQIRNQVTN ERNKTLSKIL SENGVQVQDS TLLNHIISSF QSEAITLPEA QELLRRGVTF 300
  301 DNRVVMECEK LIVSTSDPTL ISISAKLNSL KASMANHQAN LVASKQLSTY K

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [77-351]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPTVKGVITR QGQYIVDFHI VVRFPQFQRG KQVMFRMNTG LNFLLIQFSK IMTHLKNILE  60
   61 ILNQLQVATD VSEFVSKFGV AMELLNHSLI LLQNPPRDLV FPEDNNFAMK EMFQDCYSVC 120
  121 ESTAHILGLE LTLCRNELCI ELRNLIKVTK KPWCEIDSKT GRSFCDQIRN QVTNERNKTL 180
  181 SKILSENGVQ VQDSTLLNHI ISSFQSEAIT LPEAQELLRR GVTFDNRVVM ECEKLIVSTS 240
  241 DPTLISISAK LNSLKASMAN HQANLVASKQ LSTYK