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View Structure Prediction Details

Protein: NUP42
Organism: Saccharomyces cerevisiae
Length: 430 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUP42.

Description E-value Query
Range
Subject
Range
gi|9695347 - gi|9695347|gb|AAF97432.1|U23947_9 VsaC1 [Mycoplasma pulmonis]
2.0E-43 [2..425] [50..481]
gi|950163 - gi|950163|gb|AAA87033.1| nucleoporin
5.0E-42 [1..430] [1..430]
gi|15828996 - gi|15828996|ref|NP_326356.1| lipoprotein VSAC (fragment) [Mycoplasma pulmonis UAB CTIP]
gi|14089939, gi|... - pir||E90577 lipoprotein vsaC [imported] - Mycoplasma pulmonis (strain UAB CTIP) (fragment), gi|14089...
3.0E-40 [5..425] [114..542]
gi|18032249 - gi|18032249|gb|AAL56659.1|AF231130_1 NUP196 nucleoporin [Homo sapiens]
2.0E-38 [35..409] [12..403]
TCNA_TRYCR - Sialidase OS=Trypanosoma cruzi GN=TCNA PE=2 SV=1
3.0E-37 [2..427] [655..1075]
OTOGL_MOUSE - Otogelin OS=Mus musculus GN=Otog PE=1 SV=1
3.0E-33 [7..411] [1506..1909]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
3.0E-31 [5..423] [330..754]
SPBPJ4664.02 - glycoprotein
YHU2_SCHPO - Uncharacterized threonine-rich GPI-anchored glycoprotein PJ4664.02 OS=Schizosaccharomyces pombe (str...
2.0E-30 [2..424] [1756..2186]

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Predicted Domain #1
Region A:
Residues: [1-328]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAFGNPFTS GAKPNLSNTS GINPFTNNAA STNNMGGSAF GRPSFGTANT MTGGTTTSAF  60
   61 GMPQFGTNTG NTGNTSISAF GNTSNAAKPS AFGAPAFGSS APINVNPPST TSAFGAPSFG 120
  121 STGFGAMAAT SNPFGKSPGS MGSAFGQPAF GANKTAIPSS SVSNSNNSAF GAASNTPLTT 180
  181 TSPFGSLQQN ASQNASSTSS AFGKPTFGAA TNTQSPFGTI QNTSTSSGTG VSPFGTFGTN 240
  241 SNNKSPFSNL QSGAGAGSSP FGTTTSKANN NNNVGSSAFG TTNNQSPFSG GSGGTFGSAS 300
  301 NLNKNTNGNF QSSFGNKGFS FGITPQND

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 12.27
Match: 1ei3A
Description: Fibrinogen
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [329-430]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ANKVSQSNPS FGQTMPNTDP NISLKSNGNA TSFGFGQQQM NATNVNANTA TGKIRFVQGL  60
   61 SSEKDGILEL ADLAEETLKI FRANKFELGL VPDIPPPPAL VA

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 13.96
Match: 1deqA
Description: Fibrinogen
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle