| Protein: | SEC5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 971 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SEC5.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..971] | [1..971] |
|
|
0.0 | [39..969] | [77..918] |
|
|
0.0 | [39..969] | [77..918] |
|
|
0.0 | [39..969] | [77..918] |
|
|
6.0E-95 | [44..365] | [170..487] |
|
Region A: Residues: [1-86] |
1 11 21 31 41 51
| | | | | |
1 MDRFQIGDEQ LLRFYQLKTI NPTHSWAQDS SKLNNEEATS NELGVETSFD ILKDFKYGNQ 60
61 ISIDKESRAY LNDESLSYIR DPLNGQ
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.336 | 0.905 | bipolar cellular bud site selection | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.442 | 0.905 | bipolar cellular bud site selection | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.432 | 0.905 | bipolar cellular bud site selection | c.10.2 | L domain-like |
| View | Download | 0.498 | 0.905 | bipolar cellular bud site selection | a.46.1 | Methionine synthase domain |
| View | Download | 0.498 | 0.905 | bipolar cellular bud site selection | a.46.1 | Methionine synthase domain |
| View | Download | 0.442 | 0.905 | bipolar cellular bud site selection | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.432 | 0.905 | bipolar cellular bud site selection | c.10.2 | L domain-like |
| View | Download | 0.336 | 0.905 | bipolar cellular bud site selection | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.310 | 0.905 | bipolar cellular bud site selection | c.10.2 | L domain-like |
| View | Download | 0.310 | 0.905 | bipolar cellular bud site selection | c.10.2 | L domain-like |
| View | Download | 0.292 | 0.905 | bipolar cellular bud site selection | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.277 | 0.905 | bipolar cellular bud site selection | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.245 | 0.905 | bipolar cellular bud site selection | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.205 | 0.905 | bipolar cellular bud site selection | a.60.6 | DNA polymerase beta, N-terminal domain-like |
|
Region A: Residues: [87-162] |
1 11 21 31 41 51
| | | | | |
1 EMSKELQHLP NDSMRLNYLV NSKQFNVKAF LRDMHKQDSF NDLNNSLDRL DSDIQDQSIH 60
61 LKQLVGKNFT KYVKIK
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.640 | 0.087 | vesicle docking during exocytosis | a.77.1 | DEATH domain |
| View | Download | 0.535 | 0.058 | vesicle docking during exocytosis | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.537 | 0.005 | vesicle docking during exocytosis | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.640 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.583 | N/A | N/A | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.583 | N/A | N/A | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.574 | N/A | N/A | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.574 | N/A | N/A | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.537 | N/A | N/A | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.535 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.531 | N/A | N/A | a.180.1 | N-terminal, cytoplasmic domain of anti-sigmaE factor RseA |
| View | Download | 0.512 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.504 | N/A | N/A | a.64.1 | Saposin |
| View | Download | 0.459 | N/A | N/A | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.447 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.439 | N/A | N/A | a.150.1 | Anti-sigma factor AsiA |
| View | Download | 0.438 | N/A | N/A | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.438 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.436 | N/A | N/A | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.425 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.415 | N/A | N/A | a.5.3 | N-terminal domain of phosphatidylinositol transfer protein sec14p |
| View | Download | 0.411 | N/A | N/A | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.410 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.410 | N/A | N/A | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.403 | N/A | N/A | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.397 | N/A | N/A | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.391 | N/A | N/A | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.379 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.378 | N/A | N/A | a.60.2 | RuvA domain 2-like |
| View | Download | 0.366 | N/A | N/A | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.364 | N/A | N/A | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.359 | N/A | N/A | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.355 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.346 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.346 | N/A | N/A | a.50.1 | Anaphylotoxins (complement system) |
| View | Download | 0.344 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.344 | N/A | N/A | a.3.1 | Cytochrome c |
| View | Download | 0.342 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.335 | N/A | N/A | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.333 | N/A | N/A | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.330 | N/A | N/A | d.94.1 | HPr-like |
| View | Download | 0.329 | N/A | N/A | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.323 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.322 | N/A | N/A | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.320 | N/A | N/A | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.309 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.306 | N/A | N/A | d.15.3 | MoaD/ThiS |
| View | Download | 0.301 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.298 | N/A | N/A | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.296 | N/A | N/A | a.158.1 | F-box domain |
| View | Download | 0.292 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.291 | N/A | N/A | a.46.1 | Methionine synthase domain |
| View | Download | 0.290 | N/A | N/A | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.289 | N/A | N/A | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.288 | N/A | N/A | a.46.1 | Methionine synthase domain |
| View | Download | 0.286 | N/A | N/A | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.285 | N/A | N/A | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.285 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.284 | N/A | N/A | a.180.1 | N-terminal, cytoplasmic domain of anti-sigmaE factor RseA |
| View | Download | 0.284 | N/A | N/A | c.9.1 | Barstar (barnase inhibitor) |
| View | Download | 0.279 | N/A | N/A | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.277 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.273 | N/A | N/A | a.46.1 | Methionine synthase domain |
| View | Download | 0.273 | N/A | N/A | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.271 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.271 | N/A | N/A | a.140.1 | LEM domain |
| View | Download | 0.269 | N/A | N/A | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.269 | N/A | N/A | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.268 | N/A | N/A | a.144.1 | PABC (PABP) domain |
| View | Download | 0.268 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.268 | N/A | N/A | a.64.1 | Saposin |
| View | Download | 0.267 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.266 | N/A | N/A | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.258 | N/A | N/A | a.153.1 | Nuclear receptor coactivator interlocking domain |
| View | Download | 0.258 | N/A | N/A | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.258 | N/A | N/A | d.15.1 | Ubiquitin-like |
| View | Download | 0.256 | N/A | N/A | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.255 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.250 | N/A | N/A | d.15.1 | Ubiquitin-like |
| View | Download | 0.250 | N/A | N/A | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.250 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.249 | N/A | N/A | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.248 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.244 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.244 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.244 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.243 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.243 | N/A | N/A | a.64.1 | Saposin |
| View | Download | 0.242 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.232 | N/A | N/A | a.85.1 | Hemocyanin, N-terminal domain |
| View | Download | 0.229 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.229 | N/A | N/A | d.47.1 | Ribosomal protein L11, N-terminal domain |
| View | Download | 0.227 | N/A | N/A | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.222 | N/A | N/A | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.220 | N/A | N/A | a.144.1 | PABC (PABP) domain |
| View | Download | 0.219 | N/A | N/A | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.218 | N/A | N/A | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.216 | N/A | N/A | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
| View | Download | 0.215 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.214 | N/A | N/A | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.214 | N/A | N/A | a.144.1 | PABC (PABP) domain |
| View | Download | 0.212 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.207 | N/A | N/A | a.59.1 | PAH2 domain |
| View | Download | 0.205 | N/A | N/A | d.26.1 | FKBP-like |
| View | Download | 0.202 | N/A | N/A | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.201 | N/A | N/A | a.74.1 | Cyclin-like |
|
Region A: Residues: [163-392] |
1 11 21 31 41 51
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1 NKLDQIYKEF DEKTNEKNQC DSPKENQINV ESLNKKVDEV IRTTTFKLKP LMDNYQKILN 60
61 YQATKKFIEL NKFYFNLPKS LKRCLTNNDF NEFIIEYSKG LTLRRRFNQS SDASQSLVIK 120
121 RIWTQIENLL VTYKDLIWNS LINSNFNIDQ PQETILSLFS KLLNLENFIN NNQRESESGN 180
181 KNTTSSSNEN PILRWMSIKM NGFQNELNEL SGHMISKIIH SQRLILQNNT
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.720 | N/A | N/A | a.2.5 | Prefoldin |
| View | Download | 0.457 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.408 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.403 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.400 | N/A | N/A | a.7.1 | Spectrin repeat |
|
Region A: Residues: [393-532] |
1 11 21 31 41 51
| | | | | |
1 NQDKSQGCVE LSYYLKINQL FQIISDTGKD SEGLKSTVEP NKVNTISGTS YLNLNCQPSS 60
61 QGLTDSPTII EMWLLILKYI NDLWKICDQF IEFWEHIEKF LDGTYQNSII NEKRKENILI 120
121 GDSNIIESYQ KSLILKEEQI
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.295 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.384 | a.118.8 | TPR-like |
| View | Download | 0.260 | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.332 | i.11.1 | Computational models partly based on NMR data |
| View | Download | 0.288 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.260 | a.26.1 | 4-helical cytokines |
| View | Download | 0.257 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.250 | a.91.1 | Regulator of G-protein signalling, RGS |
| View | Download | 0.247 | a.118.8 | TPR-like |
| View | Download | 0.236 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.220 | a.63.1 | Apolipophorin-III |
| View | Download | 0.217 | a.26.1 | 4-helical cytokines |
| View | Download | 0.215 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
|
Region A: Residues: [533-671] |
1 11 21 31 41 51
| | | | | |
1 NEVRLKGEEF ITSVSQNLIS FFTSSQSSLP SSLKDSTGDI TRSNKDSGSP LDYGFIPPNC 60
61 NGLSCLRYLP KIVEPILKFS TELAQLNITT NGITICRNTL STIINRCVGA ISSTKLRDIS 120
121 NFYQLENWQV YETVTFSSK
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.439 | 0.051 | vesicle docking during exocytosis | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.448 | 0.019 | vesicle docking during exocytosis | a.19.1 | Fertilization protein |
| View | Download | 0.597 | 0.017 | vesicle docking during exocytosis | a.63.1 | Apolipophorin-III |
| View | Download | 0.417 | 0.006 | vesicle docking during exocytosis | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.402 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.377 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.335 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.306 | N/A | N/A | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.301 | N/A | N/A | c.50.1 | Macro domain-like |
| View | Download | 0.267 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.264 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.245 | N/A | N/A | d.67.3 | Ribosome recycling factor, RRF |
| View | Download | 0.245 | N/A | N/A | d.95.2 | Homing endonucleases |
| View | Download | 0.241 | N/A | N/A | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.211 | N/A | N/A | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.204 | N/A | N/A | c.16.1 | Lumazine synthase |
|
Region A: Residues: [672-725] |
1 11 21 31 41 51
| | | | | |
1 SQDSSKNLTF EYGVTQFPEI VTSFQEVSIK TTRDLLFAYE KLPIINGISV VSYP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.532 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.568 | a.60.12 | DNA polymerase beta-like, second domain |
| View | Download | 0.449 | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.479 | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.494 | d.58.12 | eEF-1beta-like |
| View | Download | 0.523 | a.60.12 | DNA polymerase beta-like, second domain |
| View | Download | 0.424 | a.4.1 | Homeodomain-like |
| View | Download | 0.363 | a.5.2 | UBA-like |
| View | Download | 0.343 | a.60.12 | DNA polymerase beta-like, second domain |
| View | Download | 0.323 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.314 | a.5.2 | UBA-like |
| View | Download | 0.307 | d.58.23 | Probable ACP-binding domain of malonyl-CoA ACP transacylase |
| View | Download | 0.275 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.267 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.262 | a.60.12 | DNA polymerase beta-like, second domain |
| View | Download | 0.260 | d.52.5 | Probable GTPase Der, C-terminal domain |
| View | Download | 0.258 | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.251 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.248 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.246 | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.244 | a.4.1 | Homeodomain-like |
| View | Download | 0.244 | a.5.2 | UBA-like |
| View | Download | 0.236 | a.5.2 | UBA-like |
| View | Download | 0.233 | a.5.2 | UBA-like |
| View | Download | 0.232 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.232 | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.222 | d.74.2 | C-terminal domain of arginine repressor |
| View | Download | 0.222 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.217 | d.58.5 | GlnB-like |
| View | Download | 0.205 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.201 | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.201 | a.32.1 | Transcription factor IIA (TFIIA), alpha-helical domain |
|
Region A: Residues: [726-971] |
1 11 21 31 41 51
| | | | | |
1 SKQLLTGIEI QQIISMEAVL EAILKNAAKD KDNPRNSHTI LTLTNLQYFR ECAFPNILQY 60
61 FDDAFEWNLA SKNLELFSLL SKMESSIFGN YLSDLKINLR DTLEEKFHEI NWPMYTSNSF 120
121 RVGDYIIEAL MILIVVHSEC FRIGPQLIHK ILIETQIFIA RYLFEAFKPY VGNLSNDGSL 180
181 QIIVDLEFFQ KVMGPLLEKD TEATLRACLQ NCFQNDTNRL QKCINEINPI VSANLKRTAI 240
241 QFAAFS
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
