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View Structure Prediction Details

Protein: HOM2
Organism: Saccharomyces cerevisiae
Length: 365 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HOM2.

Description E-value Query
Range		 Subject
Range
G3P_CRIGR - Glyceraldehyde-3-phosphate dehydrogenase OS=Cricetulus griseus GN=GAPDH PE=2 SV=2
 0.0 [4..362] [1..332]
G3P_RAT - Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus norvegicus GN=Gapdh PE=1 SV=3
 0.0 [4..362] [1..332]
G3P_MOUSE - Glyceraldehyde-3-phosphate dehydrogenase OS=Mus musculus GN=Gapdh PE=1 SV=2
 0.0 [4..362] [1..332]
G3P_COTJA - Glyceraldehyde-3-phosphate dehydrogenase OS=Coturnix coturnix japonica GN=GAPDH PE=2 SV=2
gi|62616, gi|484434 - gi|62616|emb|CAA79512.1| glyceraldehydephosphate dehydrogenase [Coturnix coturnix], gi|484434|pir||J...
 0.0 [4..362] [1..332]
G3P_PIG - Glyceraldehyde-3-phosphate dehydrogenase OS=Sus scrofa GN=GAPDH PE=1 SV=4
 0.0 [4..362] [1..332]
G3P_ATRNU - Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1
 0.0 [4..361] [3..335]
G3P_CHICK - Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus gallus GN=GAPDH PE=2 SV=3
 0.0 [4..362] [1..332]
G3P_FELCA - Glyceraldehyde-3-phosphate dehydrogenase OS=Felis catus GN=GAPDH PE=2 SV=3
 0.0 [4..362] [1..332]
G3PP1_ARATH - Glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic OS=Arabidopsis thaliana GN=GAPCP1 PE=...
 0.0 [2..360] [84..416]
G3P_PODAS - Glyceraldehyde-3-phosphate dehydrogenase OS=Podospora anserina GN=GPD PE=3 SV=1
 0.0 [3..361] [1..332]

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Predicted Domain #1
Region A:
Residues: [1-154] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGKKIAGVL GATGSVGQRF ILLLANHPHF ELKVLGASSR SAGKKYVDAV NWKQTDLLPE  60
   61 SATDIIVSEC KSEFFKECDI VFSGLDADYA GAIEKEFMEA GIAIVSNAKN YRREQDVPLI 120
  121 VPVVNPEHLD IVAQKLDTAK AQGKPRPGFI ICIS

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [349-365] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGSGVLIAEI LLARNLI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 97.154902
Match: 1gpdG_
Description: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [155-348] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NCSTAGLVAP LKPLIEKFGP IDALTTTTLQ AISGAGFSPG VPGIDILDNI IPYIGGEEDK  60
   61 MEWETKKILA PLAEDKTHVK LLTPEEIKVS AQCNRVAVSD GHTECISLRF KNRPAPSVEQ 120
  121 VKTCLKEYVC DAYKLGCHSA PKQTIHVLEQ PDRPQPRLDR NRDSGYGVSV GRIREDPLLD 180
  181 FKMVVLSHNT IIGA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 97.154902
Match: 1gpdG_
Description: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle