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View Structure Prediction Details

Protein: KGD2
Organism: Saccharomyces cerevisiae
Length: 463 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KGD2.

Description E-value Query
Range
Subject
Range
ODO2_YEAST - Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, m...
gi|190404894 - gi|190404894|gb|EDV08161.1| hypothetical protein SCRG_00372 [Saccharomyces cerevisiae RM11-1a]
KGD2 - Dihydrolipoyl transsuccinylase, component of the mitochondrial alpha-ketoglutarate dehydrogenase com...
0.0 [1..463] [1..463]
gi|227010100, gi... - gi|227082212|ref|YP_002810763.1| 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succin...
gi|229507825, gi... - gi|229507825|ref|ZP_04397330.1| dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarat...
gi|9656634, gi|1... - gi|9656634|gb|AAF95232.1| 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltrans...
gi|229343763, gi... - gi|229519074|ref|ZP_04408517.1| dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarat...
gi|229607370, gi... - gi|229607370|ref|YP_002878018.1| dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutara...
gi|75829400, gi|... - gi|75829400|ref|ZP_00758704.1| COG0508: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoam...
gi|147675118, gi... - gi|75827393|ref|ZP_00756828.1| COG0508: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoam...
gi|121727380, gi... - gi|75814758|ref|ZP_00745311.1| COG0508: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoam...
gi|121586902, gi... - gi|121586902|ref|ZP_01676682.1| 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succiny...
gi|124119054, gi... - gi|153222194|ref|ZP_01952973.1| 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succiny...
gi|153818382, gi... - gi|153818382|ref|ZP_01971049.1| 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succiny...
gi|11257428 - pir||A82121 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase VC2086 ...
gi|229351903, gi... - gi|229511938|ref|ZP_04401417.1| dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarat...
0.0 [72..462] [1..402]
gi|186697571, gi... - gi|186894545|ref|YP_001871657.1| dihydrolipoamide succinyltransferase [Yersinia pseudotuberculosis P...
gi|169751723, gi... - gi|170025189|ref|YP_001721694.1| dihydrolipoamide succinyltransferase [Yersinia pseudotuberculosis Y...
gi|165924674, gi... - gi|165924674|ref|ZP_02220506.1| 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succiny...
gi|21959982, gi|... - gi|22126942|ref|NP_670365.1| dihydrolipoamide acetyltransferase [Yersinia pestis KIM], gi|21959982|g...
gi|166211260, gi... - gi|166211260|ref|ZP_02237295.1| 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succiny...
gi|25286448 - pir||AB0137 dihydrolipoamide S-succinyltransferase (EC 2.3.1.61) [imported] - Yersinia pestis (strai...
gi|166011609, gi... - gi|166011609|ref|ZP_02232507.1| 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succiny...
gi|51595492, gi|... - gi|51595492|ref|YP_069683.1| dihydrolipoamide acetyltransferase [Yersinia pseudotuberculosis IP 3295...
gi|166962232, gi... - gi|167419491|ref|ZP_02311244.1| 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succiny...
gi|45435734, gi|... - gi|45440876|ref|NP_992415.1| dihydrolipoamide acetyltransferase [Yersinia pestis biovar Microtus str...
gi|167050555, gi... - gi|167399847|ref|ZP_02305365.1| 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succiny...
gi|167468939 - gi|167468939|ref|ZP_02333643.1| 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succiny...
gi|218928282, gi... - gi|218928282|ref|YP_002346157.1| dihydrolipoamide succinyltransferase [Yersinia pestis CO92], gi|161...
gi|167057125, gi... - gi|167424276|ref|ZP_02316029.1| 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succiny...
gi|77636427, gi|... - gi|77636427|ref|ZP_00798501.1| COG0508: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoam...
gi|77632107, gi|... - gi|77632107|ref|ZP_00794693.1| COG0508: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoam...
gi|149291260, gi... - gi|149366886|ref|ZP_01888920.1| dihydrolipoamide succinyltransferase component of 2-oxoglutarate deh...
gi|145599848, gi... - gi|145599848|ref|YP_001163924.1| dihydrolipoamide acetyltransferase [Yersinia pestis Pestoides F], g...
Q66DA1|Q66DA1_YERPS - Dihydrolipoamide succinyltransferase component of 2-oxoglutar... - Yersinia pseudotuberculosis
gi|89105201, gi|... - gi|89105201|ref|ZP_01177725.1| COG0508: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoam...
gi|108806589, gi... - gi|108806589|ref|YP_650505.1| dihydrolipoamide acetyltransferase [Yersinia pestis Antiqua], gi|10877...
gi|229697416, gi... - gi|229841050|ref|ZP_04461209.1| dihydrolipoyltranssuccinase [Yersinia pestis biovar Orientalis str. ...
gi|229843154, gi... - gi|229843154|ref|ZP_04463300.1| dihydrolipoyltranssuccinase [Yersinia pestis biovar Orientalis str. ...
gi|229703876, gi... - gi|229893991|ref|ZP_04509177.1| dihydrolipoyltranssuccinase [Yersinia pestis Pestoides A], gi|229703...
gi|229903485, gi... - gi|229903485|ref|ZP_04518598.1| dihydrolipoyltranssuccinase [Yersinia pestis Nepal516], gi|229679255...
0.0 [71..462] [1..405]
gi|15602143, gi|... - gi|15602143|ref|NP_245215.1| hypothetical protein PM0278 [Pasteurella multocida subsp. multocida str...
0.0 [71..462] [1..402]
gi|73854728, gi|... - gi|74311251|ref|YP_309670.1| dihydrolipoamide acetyltransferase [Shigella sonnei Ss046], gi|73854728...
gi|168777543, gi... - gi|187767227|gb|EDU31071.1| dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglut...
gi|194421839, gi... - gi|83585342|ref|ZP_00923989.1| COG0508: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoam...
gi|189002966, gi... - gi|189002966|gb|EDU71952.1| dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglut...
gi|189372983, gi... - gi|189372983|gb|EDU91399.1| dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglut...
gi|189376474, gi... - gi|189376474|gb|EDU94890.1| dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglut...
gi|193070661, gi... - gi|75234495|ref|ZP_00718842.1| COG0508: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoam...
gi|170020929, gi... - gi|170020929|ref|YP_001725883.1| dihydrolipoamide succinyltransferase [Escherichia coli ATCC 8739], ...
gi|75511614, gi|... - gi|75511614|ref|ZP_00734265.1| COG0508: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoam...
gi|170080393, gi... - gi|170080393|ref|YP_001729713.1| dihydrolipoyltranssuccinase [Escherichia coli str. K-12 substr. DH1...
gi|75189748, gi|... - gi|75189748|ref|ZP_00703015.1| COG0508: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoam...
gi|170518735, gi... - gi|170681017|ref|YP_001742827.1| dihydrolipoyllysine-residue succinyltransferase, E2 component of ox...
gi|75229641, gi|... - gi|75229641|ref|ZP_00716178.1| COG0508: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoam...
gi|194417748, gi... - gi|194433983|ref|ZP_03066254.1| dihydrolipoyllysine-residue succinyltransferase, E2 component of oxo...
gi|13360210, gi|... - gi|15830006|ref|NP_308779.1| dihydrolipoamide succinyltransferase [Escherichia coli O157:H7 str. Sak...
gi|188015221, gi... - gi|188015221|gb|EDU53343.1| dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglut...
gi|168757180, gi... - gi|189355777|gb|EDU74196.1| dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglut...
gi|189365937, gi... - gi|189365937|gb|EDU84353.1| dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglut...
gi|1651322, gi|8... - gi|89107584|ref|AP_001364.1| dihydrolipoyltranssuccinase [Escherichia coli str. K-12 substr. W3110],...
gi|189363360, gi... - gi|189363360|gb|EDU81779.1| dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglut...
gi|218360021, gi... - gi|218553253|ref|YP_002386166.1| dihydrolipoamide succinyltransferase [Escherichia coli IAI1], gi|21...
gi|218369067, gi... - gi|218699081|ref|YP_002406710.1| dihydrolipoamide succinyltransferase [Escherichia coli IAI39], gi|2...
gi|254791873, gi... - gi|254791873|ref|YP_003076710.1| dihydrolipoyltranssuccinase [Escherichia coli O157:H7 str. TW14359]...
gi|253972697, gi... - gi|254160796|ref|YP_003043904.1| dihydrolipoamide acetyltransferase [Escherichia coli B str. REL606]...
gi|195939068 - gi|195939068|ref|ZP_03084450.1| dihydrolipoamide acetyltransferase [Escherichia coli O157:H7 str. EC...
gi|253325347, gi... - gi|254287584|ref|YP_003053332.1| dihydrolipoamide acetyltransferase [Escherichia coli BL21(DE3)], gi...
ODO2_ECOLI - Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex (E...
gi|208725695, gi... - gi|208805894|ref|ZP_03248231.1| dihydrolipoyllysine-residue succinyltransferase, E2 component of oxo...
gi|251784215, gi... - gi|251784215|ref|YP_002998519.1| hypothetical protein B21_00675 [Escherichia coli BL21], gi|24237648...
ODO2_ECO57 - Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS...
gi|208815793, gi... - gi|208815793|ref|ZP_03256972.1| dihydrolipoyllysine-residue succinyltransferase, E2 component of oxo...
gi|238899991, gi... - gi|238899991|ref|YP_002925787.1| dihydrolipoyltranssuccinase [Escherichia coli BW2952], gi|238860764...
EG10980 - dihydrolipoyltranssuccinase / 2-oxoglutarate dehydrogenase, E2 component; dihydrolipoamide succinylt...
gi|208822873, gi... - gi|208822873|ref|ZP_03263191.1| dihydrolipoyllysine-residue succinyltransferase, E2 component of oxo...
gi|12513642, gi|... - gi|15800431|ref|NP_286443.1| dihydrolipoamide acetyltransferase [Escherichia coli O157:H7 EDL933], g...
gi|209397255, gi... - gi|209397255|ref|YP_002269350.1| dihydrolipoyllysine-residue succinyltransferase, E2 component of ox...
gi|209917977, gi... - gi|209917977|ref|YP_002292061.1| dihydrolipoamide succinyltransferase [Escherichia coli SE11], gi|20...
gi|215263817, gi... - gi|215485745|ref|YP_002328176.1| dihydrolipoamide succinyltransferase [Escherichia coli O127:H6 str....
gi|217322317, gi... - gi|217326096|ref|ZP_03442180.1| dihydrolipoyllysine-residue succinyltransferase, E2 component of oxo...
gi|124526818, gi... - gi|124526818|ref|ZP_01698700.1| 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinylt...
EG10980 - dihydrolipoyltranssuccinase / 2-oxoglutarate dehydrogenase, E2 component; dihydrolipoamide succinylt...
0.0 [71..462] [1..403]
DBT - dihydrolipoamide branched chain transacylase E2
HGNC:2698|MIM:24... - branched chain transacylase E2
gi|61359897, gi|... - gi|61359903|gb|AAX41784.1| dihydrolipoamide branched chain transacylase [synthetic construct], gi|61...
0.0 [9..462] [3..479]
ODO2_RICPR - Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS...
ODO2_RICPR - Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS...
0.0 [72..462] [1..399]
gi|15614768, gi|... - gi|15614768|ref|NP_243071.1| dihydrolipoamide acetyltransferase [Bacillus halodurans C-125], gi|1017...
gi|25286430 - pir||E83925 dihydrolipoamide succinyltransferase BH2205 [imported] - Bacillus halodurans (strain C-1...
0.0 [74..462] [2..409]

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Predicted Domain #1
Region A:
Residues: [1-70]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSRATRTAA AKSLVKSKVA RNVMAASFVK RHASTSLFKQ ANKVESLGSI YLSGKKISVA  60
   61 ANPFSITSNR 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [71-182]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FKSTSIEVPP MAESLTEGSL KEYTKNVGDF IKEDELLATI ETDKIDIEVN SPVSGTVTKL  60
   61 NFKPEDTVTV GEELAQVEPG EAPAEGSGES KPEPTEQAEP SQGVAARENS SE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 67.9897
Match: 1lab__
Description: Ipoyl domain of dihydrolipoamide acetyltransferase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [183-231]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETASKKEAAP KKEAAPKKEV TEPKKADQPK KTVSKAQEPP VASNSFTPF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.09691
Match: 2pdd__
Description: E3/E1 binding domain of dihydrolipoyl acetyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
S-succinyltransferase activity 10.0778678835755 bayes_pls_golite062009
dihydrolipoyllysine-residue succinyltransferase activity 10.0778678835755 bayes_pls_golite062009
S-acyltransferase activity 9.57991961071442 bayes_pls_golite062009
succinyltransferase activity 6.58826720904067 bayes_pls_golite062009
acyltransferase activity 6.14362200989279 bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups 6.13552509992797 bayes_pls_golite062009
dihydrolipoamide S-acyltransferase activity 4.1573115612763 bayes_pls_golite062009
dihydrolipoyllysine-residue acetyltransferase activity 3.95619571226032 bayes_pls_golite062009
transferase activity, transferring acyl groups 3.91600160749755 bayes_pls_golite062009
S-acetyltransferase activity 3.80731268500197 bayes_pls_golite062009
carnitine O-acyltransferase activity 1.95284873022177 bayes_pls_golite062009
catalytic activity 1.51562638409295 bayes_pls_golite062009
pyruvate dehydrogenase activity 1.47989209806246 bayes_pls_golite062009
O-acyltransferase activity 1.33852311685118 bayes_pls_golite062009
acetyltransferase activity 1.12787027896966 bayes_pls_golite062009
transferase activity 1.08341671157927 bayes_pls_golite062009
binding 0.801074244553007 bayes_pls_golite062009
O-palmitoyltransferase activity 0.36133273832704 bayes_pls_golite062009
carnitine O-palmitoyltransferase activity 0.36133273832704 bayes_pls_golite062009
carnitine O-acetyltransferase activity 0.154650266774881 bayes_pls_golite062009
O-acetyltransferase activity 0.1424856707148 bayes_pls_golite062009
protein binding 0.00454070917775817 bayes_pls_golite062009

Predicted Domain #4
Region A:
Residues: [232-463]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRTETRVKMN RMRLRIAERL KESQNTAASL TTFNEVDMSA LMEMRKLYKD EIIKKTGTKF  60
   61 GFMGLFSKAC TLAAKDIPAV NGAIEGDQIV YRDYTDISVA VATPKGLVTP VVRNAESLSV 120
  121 LDIENEIVRL SHKARDGKLT LEDMTGGTFT ISNGGVFGSL YGTPIINSPQ TAVLGLHGVK 180
  181 ERPVTVNGQI VSRPMMYLAL TYDHRLLDGR EAVTFLKTVK ELIEDPRKML LW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 870.0
Match: 1c4tA_
Description: Dihydrolipoamide succinyltransferase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle