YRC Public Data Repository - Protein Structure Prediction

Protein:	BMH2
Organism:	Saccharomyces cerevisiae
Length:	273 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BMH2.

Description	E-value	Query Range	Subject Range
gi\|17017334 - gi\|17017334\|gb\|AAL33624.1\|AF440230_1 protein kinase A activity reporter 1 fusion protein [synthetic ...	0.0	[1..249]	[230..475]
gi\|487918 - gi\|487918\|dbj\|BAA06401.1\| mitochondrial import stimulation factor L subunit [Rattus sp.] 1433E_CHICK - 14-3-3 protein epsilon OS=Gallus gallus GN=YWHAE PE=1 SV=1 gi\|114665586, gi... - gi\|55644755\|ref\|XP_511249.1\| PREDICTED: similar to epsilon isoform of 14-3-3 protein isoform 6 [Pan ... 1433E_RAT - 14-3-3 protein epsilon OS=Rattus norvegicus GN=Ywhae PE=1 SV=1 gi\|55741616 - ref\|NP_001006219.1\| similar to epsilon isoform of 14-3-3 protein [Gallus gallus] 1433E_BOVIN - 14-3-3 protein epsilon OS=Bos taurus GN=YWHAE PE=2 SV=1 1433E_MOUSE - 14-3-3 protein epsilon OS=Mus musculus GN=Ywhae PE=1 SV=1 1433E_SHEEP - 14-3-3 protein epsilon OS=Ovis aries GN=YWHAE PE=1 SV=1 YWHAE - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide gi\|60655097, gi\|... - gi\|61363157\|gb\|AAX42344.1\| tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein ep... gi\|67971280, gi\|... - gi\|90077006\|dbj\|BAE88183.1\| unnamed protein product [Macaca fascicularis], gi\|67971280\|dbj\|BAE01982.... gi\|73967156 - gi\|73967156\|ref\|XP_854358.1\| PREDICTED: similar to 14-3-3 protein epsilon (14-3-3E) (Mitochondrial i... gi\|149724150 - gi\|149724150\|ref\|XP_001504337.1\| PREDICTED: similar to epsilon isoform of 14-3-3 protein [Equus caba...	0.0	[3..257]	[2..255]
gi\|2895518, gi\|2... - gi\|2895518\|gb\|AAC41251.1\| 14-3-3 protein epsilon [Xenopus laevis], gi\|27924430\|gb\|AAH45025.1\| Ywhae-...	0.0	[4..257]	[3..255]
gi\|13928824, gi\|... - gi\|1469948\|gb\|AAC52676.1\| 14-3-3 protein epsilon isoform, gi\|13928824\|ref\|NP_113791.1\| tyrosine 3-mo...	0.0	[3..257]	[2..255]
gi\|4775555 - gi\|4775555\|emb\|CAB42547.1\| 14-3-3-like protein [Pisum sativum]	0.0	[5..257]	[8..261]
1433A_VICFA - 14-3-3-like protein A OS=Vicia faba PE=2 SV=1	0.0	[5..257]	[8..261]
BMH2_YEAST - Protein BMH2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BMH2 PE=1 SV=3 gi\|190404937 - gi\|190404937\|gb\|EDV08204.1\| member of conserved eukaryotic 14-3-3 gene family [Saccharomyces cerevis... gi\|207346737 - gi\|207346737\|gb\|EDZ73145.1\| YDR099Wp-like protein [Saccharomyces cerevisiae AWRI1631] BMH2 - 14-3-3 protein, minor isoform; controls proteome at post-transcriptional level, binds proteins and D...	0.0	[1..273]	[1..273]
14332_ARATH - 14-3-3-like protein GF14 omega OS=Arabidopsis thaliana GN=GRF2 PE=2 SV=2	0.0	[1..258]	[1..259]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.0	[1..273]	[1..273]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQTREDSVY LAKLAEQAER YEEMVENMKA VASSGQELSV EERNLLSVAY KNVIGARRAS  60
   61 WRIVSSIEQK EESKEKSEHQ VELIRSYRSK IETELTKISD DILSVLDSHL IPSAT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	837.228787
Match:	1a37A_
Description:	zeta isoform
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [116-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGESKVFYYK MKGDYHRYLA EFSSGDAREK ATNSSLEAYK TASEIATTEL PPTHPIRLGL  60
   61 ALNFSVFYYE IQNSPDKACH LAKQAFDDAI AELDTLSEES YKDSTLIMQL LRDNLTLWTS 120
  121 DISESGQEDQ QQQQQQQQQQ QQQQQQAPAE QTQGEPTK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	837.228787
Match:	1a37A_
Description:	zeta isoform
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits