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View Structure Prediction Details

Protein: UBC13
Organism: Saccharomyces cerevisiae
Length: 153 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBC13.

Description E-value Query
Range
Subject
Range
gi|109066782 - gi|109066782|ref|XP_001096263.1| PREDICTED: similar to ubiquitin-conjugating enzyme E2D 4 (putative)...
gi|114613001, gi... - gi|114613001|ref|XP_519070.2| PREDICTED: ubiquitin-conjugating enzyme E2D 4 (putative) isoform 4 [Pa...
UBE2D4 - ubiquitin-conjugating enzyme E2D 4 (putative)
6.0E-60 [4..149] [2..147]
gi|187034543, gi... - gi|39593702|emb|CAE61994.1| Hypothetical protein CBG06002 [Caenorhabditis briggsae], gi|187034543|em...
gi|170589261, gi... - gi|170589261|ref|XP_001899392.1| ubiquitin-conjugating enzyme ubc-2 [Brugia malayi], gi|158593605|gb...
gi|209489351 - gi|209489351|gb|ACI49123.1| hypothetical protein Cbre_JD14.011 [Caenorhabditis brenneri]
let-70 - ubiquitin-conjugating enzyme E2-17 KD status:Confirmed UniProt:P35129 protein_id:CAA92745.1
CRE12761, FL81_0... - RP40331 WBGene00062522 locus:Cre-let-70 status:Confirmed, null
gi|157755991 - gi|157755991|ref|XP_001670339.1| Hypothetical protein CBG06002 [Caenorhabditis briggsae AF16]
9.0E-60 [4..149] [2..147]
gi|456568 - gi|456568|gb|AAA64427.1| ubiquitin conjugating enzyme
1.0E-59 [4..149] [2..147]
gi|11762186 - gi|11762186|gb|AAG40371.1|AF325019_1 AT4g27960 [Arabidopsis thaliana]
1.0E-59 [4..149] [32..177]

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Predicted Domain #1
Region A:
Residues: [1-153]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLPKRIIK ETEKLVSDPV PGITAEPHDD NLRYFQVTIE GPEQSPYEDG IFELELYLPD  60
   61 DYPMEAPKVR FLTKIYHPNI DRLGRICLDV LKTNWSPALQ IRTVLLSIQA LLASPNPNDP 120
  121 LANDVAEDWI KNEQGAKAKA REWTKLYAKK KPE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 839.529817
Match: 1jbbA_
Description: Ubiquitin conjugating enzyme, UBC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ubiquitin-protein ligase activity 11.3486134076304 bayes_pls_golite062009
small conjugating protein ligase activity 11.2964721480824 bayes_pls_golite062009
acid-amino acid ligase activity 10.2401422444624 bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds 8.93602533934698 bayes_pls_golite062009
HLH domain binding 8.10904818707269 bayes_pls_golite062009
ligase activity 5.17219147802758 bayes_pls_golite062009
SUMO ligase activity 3.88357560284404 bayes_pls_golite062009
ISG15 ligase activity 3.37361650623694 bayes_pls_golite062009
transcription regulator activity 2.21355731489173 bayes_pls_golite062009
nucleic acid binding 2.13970605403492 bayes_pls_golite062009
DNA binding 1.95596447916631 bayes_pls_golite062009
protein binding 1.77678273247394 bayes_pls_golite062009
binding 1.75350658654805 bayes_pls_golite062009
transcription repressor activity 1.5236035191291 bayes_pls_golite062009
transcription activator activity 1.19240180311941 bayes_pls_golite062009
catalytic activity 0.891402822028799 bayes_pls_golite062009
NEDD8 ligase activity 0.715654744941217 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.58835335751383 bayes_pls_golite062009
kinase activity 0.519703305315987 bayes_pls_golite062009
protein kinase activity 0.443948654247666 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.373779304908933 bayes_pls_golite062009
protein serine/threonine kinase activity 0.182854082413338 bayes_pls_golite062009
transcription corepressor activity 0.122859425935324 bayes_pls_golite062009
transferase activity 0.0984525836903841 bayes_pls_golite062009
transcription factor binding 0.0104967529560147 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle