Protein: | RRP1 |
Organism: | Saccharomyces cerevisiae |
Length: | 278 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRP1.
Description | E-value | Query Range |
Subject Range |
|
327.0 | [0..6] | [264..12] |
|
326.0 | [0..6] | [264..12] |
|
324.0 | [0..6] | [264..12] |
|
304.0 | [0..6] | [277..13] |
Region A: Residues: [1-88] |
1 11 21 31 41 51 | | | | | | 1 METSNFVKQL SSNNRKTRVN ALEALKKYLT AKQFKENKQI EFNKLWKGLY YAMWFSDRPR 60 61 PQQRLANELG ELHGLYFDPK DNSTADEL |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.930 | a.24.9 | alpha-catenin/vinculin |
View | Download | 0.889 | a.48.4 | Description not found. |
View | Download | 0.882 | a.24.9 | alpha-catenin/vinculin |
View | Download | 0.878 | a.24.9 | alpha-catenin/vinculin |
View | Download | 0.872 | a.29.10 | Description not found. |
View | Download | 0.843 | a.118.1 | ARM repeat |
View | Download | 0.841 | a.46.1 | Methionine synthase domain |
View | Download | 0.812 | f.1.4 | Bcl-2 inhibitors of programmed cell death |
View | Download | 0.791 | a.118.1 | ARM repeat |
View | Download | 0.790 | a.7.6 | Ribosomal protein S20 |
Region A: Residues: [89-278] |
1 11 21 31 41 51 | | | | | | 1 TTNDKAFIKF SRGFWKVMCF EWFNIDRYRL DKYLLLIRRV LFSQLKYLQS RNWDKKLVDE 60 61 YIKKVLRWLP LSGSPKVYTG IPIHIVDILL DEWERLLKDG DEDDEDEENK EEEMRKIAES 120 121 AKKTPLADVI AIFQDIVADY NNSKVLREKI KEDLFSDTRL VSWDILEGET QHNDSSNESE 180 181 EEEEEEWKGF |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.508 | N/A | N/A | a.118.8 | TPR-like |
View | Download | 0.507 | N/A | N/A | a.74.1 | Cyclin-like |
View | Download | 0.443 | N/A | N/A | a.74.1 | Cyclin-like |
View | Download | 0.411 | N/A | N/A | a.74.1 | Cyclin-like |
View | Download | 0.411 | N/A | N/A | a.74.1 | Cyclin-like |
View | Download | 0.405 | N/A | N/A | a.167.1 | Porin chaperone SurA, peptide-binding domain |
View | Download | 0.405 | N/A | N/A | a.223.1 | Description not found. |
View | Download | 0.385 | N/A | N/A | a.74.1 | Cyclin-like |