| Protein: | SED1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 338 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SED1.
| Description | E-value | Query Range |
Subject Range |
|
|
1.0E-41 | [3..338] | [792..1130] |
|
|
4.0E-41 | [3..309] | [555..861] |
|
|
6.0E-41 | [1..337] | [672..1031] |
|
Region A: Residues: [1-338] |
1 11 21 31 41 51
| | | | | |
1 MKLSTVLLSA GLASTTLAQF SNSTSASSTD VTSSSSISTS SGSVTITSSE APESDNGTST 60
61 AAPTETSTEA PTTAIPTNGT STEAPTTAIP TNGTSTEAPT DTTTEAPTTA LPTNGTSTEA 120
121 PTDTTTEAPT TGLPTNGTTS AFPPTTSLPP SNTTTTPPYN PSTDYTTDYT VVTEYTTYCP 180
181 EPTTFTTNGK TYTVTEPTTL TITDCPCTIE KPTTTSTTEY TVVTEYTTYC PEPTTFTTNG 240
241 KTYTVTEPTT LTITDCPCTI EKSEAPESSV PVTESKGTTT KETGVTTKQT TANPSLTVST 300
301 VVPVSSSASS HSVVINSNGA NVVVPGALGL AGVAMLFL
|
| Detection Method: |  |
| Confidence: | 14.81 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [237-338] |
1 11 21 31 41 51
| | | | | |
1 TTNGKTYTVT EPTTLTITDC PCTIEKSEAP ESSVPVTESK GTTTKETGVT TKQTTANPSL 60
61 TVSTVVPVSS SASSHSVVIN SNGANVVVPG ALGLAGVAML FL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
