YRC Public Data Repository - Protein Structure Prediction

Protein:	FMP16
Organism:	Saccharomyces cerevisiae
Length:	93 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FMP16.

Description	E-value	Query Range	Subject Range
gi\|151942059 - gi\|151942059\|gb\|EDN60415.1\| conserved protein [Saccharomyces cerevisiae YJM789] gi\|190404962 - gi\|190404962\|gb\|EDV08229.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] FMP16 - Putative protein of unknown function; proposed to be involved in responding to conditions of stress;... FMP16_YEAST - Protein FMP16, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FMP16 PE=1 ...	2.0E-42	[1..93]	[1..93]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRTTFLRTP RQLMRKSPRA SFSIVTRAAF PHLKNNQDEA EKKEQGLFDS NKKRLDTLEH  60
   61 GKNPDYKQPG MEDLKKKGDD ARIEQNRPDD GVY

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Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.252	a.24.13	Domain of the SRP/SRP receptor G-proteins
View	Download	0.252	a.24.13	Domain of the SRP/SRP receptor G-proteins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits