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View Structure Prediction Details

Protein: RPC11
Organism: Saccharomyces cerevisiae
Length: 110 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPC11.

Description E-value Query
Range
Subject
Range
gi|190404984 - gi|190404984|gb|EDV08251.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Saccharomyces cer...
RPC11 - RNA polymerase III subunit C11; mediates pol III RNA cleavage activity and is important for terminat...
ORFP:3914 - YDR045C, Contig c130 7458-7790 reverse complement
RPC10_YEAST - DNA-directed RNA polymerase III subunit RPC10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288...
gi|151942036 - gi|151942036|gb|EDN60392.1| RNA polymerase C [Saccharomyces cerevisiae YJM789]
1.0E-31 [1..110] [1..110]
gi|18893037, gi|... - gi|18977358|ref|NP_578715.1| DNA-directed RNA polymerase subunit M [Pyrococcus furiosus DSM 3638], g...
1.0E-27 [1..108] [1..107]
gi|12862220 - gi|12862220|dbj|BAB32384.1| unnamed protein product [Mus musculus]
3.0E-27 [1..109] [1..108]
gi|15623381, gi|... - gi|15922591|ref|NP_378260.1| putative DNA-directed RNA polymerase subunit M [Sulfolobus tokodaii str...
3.0E-27 [2..109] [1..110]
POLR3K - polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa
gi|157929168, gi... - gi|157929168|gb|ABW03869.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [synthetic c...
tr|M3WAT9|M3WAT9... - DNA-directed RNA polymerase subunit OS=Felis catus GN=POLR3K PE=3 SV=1
6.0E-27 [1..109] [1..108]
TFS_SULAC - Transcription factor S OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 1...
RPOM_SULAC - DNA-directed RNA polymerase subunit M OS=Sulfolobus acidocaldarius GN=rpoM PE=3 SV=2
7.0E-27 [1..109] [91..200]
TFS_THECE - Transcription factor S OS=Thermococcus celer GN=tfs PE=1 SV=1
8.0E-27 [2..108] [1..107]
gi|5458798, gi|7... - pir||H75048 DNA-directed RNA polymerase (EC 2.7.7.6) chain M PAB1464 - Pyrococcus abyssi (strain Ors...
gi|5458798, gi|1... - gi|5458798|emb|CAB50285.1| tfs archaeal transcription factor S [Pyrococcus abyssi GE5], gi|14521579|...
1.0E-26 [1..108] [1..107]

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Predicted Domain #1
Region A:
Residues: [1-56]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSFCPSCNN MLLITSGDSG VYTLACRSCP YEFPIEGIEI YDRKKLPRKE VDDVLG

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 23.677781
Match: PF02150
Description: RNA polymerases M/15 Kd subunit

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [57-110]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGWDNVDQTK TQCPNYDTCG GESAYFFQLQ IRSADEPMTT FYKCVNCGHR WKEN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 91.9897
Match: 1qyp__
Description: RBP9 subunit of RNA polymerase II
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle