YRC Public Data Repository - Protein Structure Prediction

Protein:	YDL242W
Organism:	Saccharomyces cerevisiae
Length:	117 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDL242W.

Description	E-value	Query Range	Subject Range
MRL1 - Membrane protein with similarity to mammalian mannose-6-phosphate receptors, possibly functions as a... gi\|190408012 - gi\|190408012\|gb\|EDV11277.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] MRL1_YEAST - Mannose 6-phosphate receptor-like protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)...	108.0	[0..21]	[105..304]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLEESQSNR GTLNIKKILV IVCMTNKICK HLIQSLLLSK RRLVSVLFDN YQGDMKLRSS  60
   61 PSAIPLVPST KILQAMEARN DIVDSLIINS HATESDRRTL GDHEVRQCED TNFGFKI

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Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits