| Protein: | GYP7 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 746 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GYP7.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [1..746] | [1..746] |
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0.0 | [10..707] | [83..774] |
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0.0 | [10..742] | [20..725] |
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0.0 | [4..729] | [31..730] |
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0.0 | [3..716] | [7..605] |
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2.0E-96 | [3..628] | [7..515] |
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3.0E-80 | [140..746] | [493..1038] |
|
Region A: Residues: [1-250] |
1 11 21 31 41 51
| | | | | |
1 MSKILFCKSK VFLHPTSDAR DNIAGFLLLT LEANKLSHQA ILQYIPESGL STLEISKLLK 60
61 HEAKVGTCPT STPFVIENSI NFSNLVNTSL GQAFEISLSQ IYCIQFRPPS PNGWYVGSLV 120
121 IYPLTEQFTG FQPPVLFFHD QLCPSTTDKL KRLRKSMNPF DDSDELYWGG VDLRNKINEL 180
181 MELKKSNLEP EFWLVNPSLN DLRNFVSKDL LESYNNSKKD TTELATAGVK LNEKFQEWKW 240
241 NVMSKIADVT
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [251-352] |
1 11 21 31 41 51
| | | | | |
1 TKSTNFIDSW LTNNSPIQKS QIDNEYLQKL LNNEKVKQIE QDYDSARVYL ANWSLGVKQE 60
61 AERYQKQNKL FDSYRNNIFN DLNLTDELSD TEINNALQRQ FP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.769 | a.1.1 | Globin-like |
| View | Download | 0.541 | a.164.1 | C-terminal domain of DFF45/ICAD (DFF-C domain) |
| View | Download | 0.540 | a.74.1 | Cyclin-like |
| View | Download | 0.531 | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.523 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.509 | a.118.1 | ARM repeat |
| View | Download | 0.483 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.476 | a.165.1 | Myosin phosphatase inhibitor 17kDa protein, CPI-17 |
| View | Download | 0.450 | a.46.1 | Methionine synthase domain |
| View | Download | 0.439 | a.74.1 | Cyclin-like |
| View | Download | 0.434 | a.74.1 | Cyclin-like |
| View | Download | 0.416 | d.150.1 | 4'-phosphopantetheinyl transferase |
| View | Download | 0.376 | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.352 | a.25.1 | Ferritin-like |
| View | Download | 0.350 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.331 | a.77.1 | DEATH domain |
| View | Download | 0.319 | a.7.7 | BAG domain |
| View | Download | 0.316 | a.69.1 | C-terminal domain of alpha and beta subunits of F1 ATP synthase |
| View | Download | 0.305 | a.51.1 | Cytochrome c oxidase subunit h |
| View | Download | 0.285 | b.49.2 | Alanine racemase C-terminal domain-like |
| View | Download | 0.279 | a.7.1 | Spectrin repeat |
| View | Download | 0.271 | a.85.1 | Hemocyanin, N-terminal domain |
| View | Download | 0.271 | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.269 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.267 | d.8.1 | Urease, gamma-subunit |
| View | Download | 0.265 | d.58.49 | YajQ-like |
| View | Download | 0.262 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.254 | d.42.1 | POZ domain |
| View | Download | 0.250 | a.3.1 | Cytochrome c |
| View | Download | 0.249 | a.118.9 | ENTH/VHS domain |
| View | Download | 0.243 | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
| View | Download | 0.243 | a.77.1 | DEATH domain |
| View | Download | 0.236 | a.79.1 | Antitermination factor NusB |
| View | Download | 0.231 | a.3.1 | Cytochrome c |
| View | Download | 0.229 | a.130.1 | Chorismate mutase II |
| View | Download | 0.227 | a.39.1 | EF-hand |
| View | Download | 0.214 | d.137.1 | Monooxygenase (hydroxylase) regulatory protein |
| View | Download | 0.212 | a.138.1 | Multiheme cytochromes |
| View | Download | 0.212 | a.1.1 | Globin-like |
| View | Download | 0.212 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.209 | a.74.1 | Cyclin-like |
| View | Download | 0.206 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.200 | a.26.1 | 4-helical cytokines |
|
Region A: Residues: [353-570] |
1 11 21 31 41 51
| | | | | |
1 LTEAKWNSLW DENDGRLRVT VNEVKDFIFH GGLENDSLRG KVWGFLLEIY PWDSSQDERV 60
61 QIDQTLAAEY DQLKLTWSKD FLQFDDEDEE EYWNDQLFRI SKDVRRCDRN LEIFQYNTID 120
121 GLPPPPQQLP ANENNSTSPE SANDESDDAD DGVRNPHLIH LQNILITYNV YNTNLGYVQG 180
181 MTDLLSPIYV IMKEEWKTFW CFTHFMDIME RNFLRDQS
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Region B: Residues: [624-632] |
1 11 21 31 41 51
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1 HIWENFWTF
|
| Detection Method: | |
| Confidence: | 101.0103 |
| Match: | 1fkmA_ |
| Description: | Ypt/Rab-GAP domain of gyp1p |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [571-623] |
1 11 21 31 41 51
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1 GIHEQMLTLV ELVQLMLPEL SEHLNKCDSG NLFFCFRMLL VWFKREFEME DIM
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| Detection Method: | |
| Confidence: | 101.0103 |
| Match: | 1fkmA_ |
| Description: | Ypt/Rab-GAP domain of gyp1p |
| Matching Structure (courtesy of the PDB): |
|
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Region A: Residues: [633-746] |
1 11 21 31 41 51
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1 YYSSQFQLFF MLAILQKNSQ AILQHLNQFD QILKFFNELN GKLDWNDLMV RAELLFKKFE 60
61 KMMHVMERDL QNVSSSSSSS STGVLPCQSE RLTLLLSKKP IIRHEGQRSK NSVK
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.836 | 0.229 | Rab GTPase activator activity | a.21.1 | HMG-box |
| View | Download | 0.442 | 0.112 | Rab GTPase activator activity | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.449 | 0.009 | Rab GTPase activator activity | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.549 | N/A | N/A | a.21.1 | HMG-box |
| View | Download | 0.434 | N/A | N/A | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.379 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.372 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.345 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.329 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.320 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.320 | N/A | N/A | a.7.7 | BAG domain |
| View | Download | 0.304 | N/A | N/A | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
| View | Download | 0.299 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.279 | N/A | N/A | d.129.4 | Cell-division protein ZipA, C-terminal domain |
| View | Download | 0.259 | N/A | N/A | a.46.1 | Methionine synthase domain |
| View | Download | 0.257 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.242 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.242 | N/A | N/A | a.4.13 | Sigma3 and sigma4 domains of RNA polymerase sigma factors |
| View | Download | 0.238 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.236 | N/A | N/A | d.228.1 | Replication modulator SeqA, C-terminal DNA-binding domain |
| View | Download | 0.233 | N/A | N/A | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.230 | N/A | N/A | d.150.1 | 4'-phosphopantetheinyl transferase |
| View | Download | 0.228 | N/A | N/A | f.21.2 | Fumarate reductase respiratory complex transmembrane subunits |
| View | Download | 0.227 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.226 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.223 | N/A | N/A | a.79.1 | Antitermination factor NusB |
| View | Download | 0.218 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.212 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.211 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.211 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.209 | N/A | N/A | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.209 | N/A | N/A | d.150.1 | 4'-phosphopantetheinyl transferase |
| View | Download | 0.208 | N/A | N/A | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.201 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
