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View Structure Prediction Details

Protein: YDL180W
Organism: Saccharomyces cerevisiae
Length: 547 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDL180W.

Description E-value Query
Range
Subject
Range
YD180_YEAST - Uncharacterized membrane protein YDL180W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN...
YDL180W - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th...
0.0 [1..547] [1..547]

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Predicted Domain #1
Region A:
Residues: [1-547]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRLNHAASY FMPIFCSTRP HIVILSALFS ISLFSLFYAS SELLLHQYDD PLMFKPNSQD  60
   61 YFRTFLLGLF SPFLYYFLKT FLFNINQRFL ILNLIVDFPI NDVFMLLILI GLAYPQVQDH 120
  121 EGGTIKHKEC SWHIIPRQAY IFGISWALGE FTICIIGNLF NYQEIADPNI NSGFTHQESA 180
  181 NTYCNNNDMS HNDDCGCSTE YRPNVVDRSD ITLSKCIEVR NDSSSISNNV YSSEYHPIKP 240
  241 LRSSSSTYGS IRQQPHENKK QLHVPDNSQD DTIIMMNPID NSLKLTTLDT GDLSFPIDEE 300
  301 QPILKKSFGY TWAVPNENTQ NTTKSFTPIK RFIAFSTAYQ LVTGLLLMIL VVGSNIMLTI 360
  361 GESLILSMYF VYVRGHEGLF TPVVNYFGSR TISNFILCVI IPFISLNFLI NTSIYLRREL 420
  421 DDWFNNSQGE FEDDDENTIS KRVATNQEYQ HPLSANYISM DSPDVINSSP GHFGMNSGQL 480
  481 LGNTTLYYGS LNGDDDDMTN DSALLRFCKK LVKNWRALAR NDSFVLGVMV SWSLLVFVTG 540
  541 ILSTVYI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [170-255]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 INSGFTHQES ANTYCNNNDM SHNDDCGCST EYRPNVVDRS DITLSKCIEV RNDSSSISNN  60
   61 VYSSEYHPIK PLRSSSSTYG SIRQQP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [256-547]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HENKKQLHVP DNSQDDTIIM MNPIDNSLKL TTLDTGDLSF PIDEEQPILK KSFGYTWAVP  60
   61 NENTQNTTKS FTPIKRFIAF STAYQLVTGL LLMILVVGSN IMLTIGESLI LSMYFVYVRG 120
  121 HEGLFTPVVN YFGSRTISNF ILCVIIPFIS LNFLINTSIY LRRELDDWFN NSQGEFEDDD 180
  181 ENTISKRVAT NQEYQHPLSA NYISMDSPDV INSSPGHFGM NSGQLLGNTT LYYGSLNGDD 240
  241 DDMTNDSALL RFCKKLVKNW RALARNDSFV LGVMVSWSLL VFVTGILSTV YI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle