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View Structure Prediction Details

Protein: PCL9
Organism: Saccharomyces cerevisiae
Length: 304 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PCL9.

Description E-value Query
Range		 Subject
Range
gi|5420276 - gi|5420276|emb|CAB46642.1| cyclin A2 [Solanum lycopersicum]
 2.0E-67 [4..278] [201..475]
PCL9_YEAST - PHO85 cyclin-9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PCL9 PE=1 SV=1
gi|190405175 - gi|190405175|gb|EDV08442.1| hypothetical protein SCRG_00671 [Saccharomyces cerevisiae RM11-1a]
gi|207347108 - gi|207347108|gb|EDZ73401.1| YDL179Wp-like protein [Saccharomyces cerevisiae AWRI1631]
PCL9 - Cyclin, forms a functional kinase complex with Pho85p cyclin-dependent kinase (Cdk), expressed in la...
 1.0E-65 [1..304] [1..304]
CCNB1_ORYCU - G2/mitotic-specific cyclin-B1 OS=Oryzias curvinotus GN=ccnb1 PE=2 SV=1
 5.0E-64 [2..274] [126..391]
CCNB1_ORYLA - G2/mitotic-specific cyclin-B1 OS=Oryzias latipes GN=ccnb1 PE=2 SV=1
 7.0E-64 [2..274] [129..394]
CCNB2_MOUSE, CGB... - (P30276) G2/mitotic-specific cyclin B2, G2/mitotic-specific cyclin-B2 OS=Mus musculus GN=Ccnb2 PE=2 ...
 7.0E-63 [2..271] [120..386]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
 1.0E-62 [4..278] [219..493]
CCA24_ARATH - Cyclin-A2-4 OS=Arabidopsis thaliana GN=CYCA2-4 PE=2 SV=1
 2.0E-62 [4..270] [185..451]
gi|1665741 - gi|1665741|dbj|BAA11560.1| cyclin [Adiantum capillus-veneris]
 4.0E-62 [2..276] [251..525]
CCNB2_MESAU - G2/mitotic-specific cyclin-B2 OS=Mesocricetus auratus GN=CCNB2 PE=2 SV=1
 4.0E-62 [2..273] [119..383]

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Predicted Domain #1
Region A:
Residues: [1-26] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISDYDALLQ FNKKPVSQEM IQFLAT

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [150-304] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDLIDSLSYF LGPIKEQLFL QRRQEMLLFN APSPGQLKEY INHRRPVSHS RTSSAISVPS  60
   61 LTSMATVSTT DSRSSLLAKY QPSLPLVESD NFNKKNHVPL RNNNDICNNF RAEENIHSVN 120
  121 HIDVTMGSSP VMSHKPTIHQ RLNFTRRGWS SFFKQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 52.154902
Match: 1vin__
Description: Cyclin A
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [27-149] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STASIIKIRE NNNPIQGCRP PDLSIFIKNV VIQSNVQTPT LMATSVYLNK LKSVIPKNVY  60
   61 GINTTRHRIF LGCLILAAKT LNDSSPWNKH WTTYTEGLLR IREVNTIERE LLEYLNWDVR 120
  121 ITT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 52.154902
Match: 1vin__
Description: Cyclin A
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle