YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CMR1
Organism: Saccharomyces cerevisiae
Length: 522 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CMR1.

Description E-value Query
Range
Subject
Range
gi|17225208 - gi|17225208|gb|AAL37300.1|AF323584_1 beta transducin-like protein HET-E2C*40 [Podospora anserina]
0.0 [9..520] [766..1255]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=...
gi|25530855 - pir||AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)
0.0 [53..519] [1082..1487]

Back

Predicted Domain #1
Region A:
Residues: [1-93]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPELTEFQKK RLENIKRNND LLKKLHLSGV ASQIKHEAGV LEKSRAPAKK KQKTTNTRAT  60
   61 KSASPTLPTR RSRRLRGESA DDVKGIPNVN DNQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [94-522]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLKMGSPDGQ DKNFIDAIKE KPVIGDVKLS DLIKDEDESA LLEKFKRFNN GNFSSGDFFE  60
   61 EIKKRQGDVT GMDEFDLDLY DVFQPNEIKI TYERISATYF HPAMEKKLII AGDTSGTVGF 120
  121 WNVRDEPLAD SEEDRMEEPD ITRVKLFTKN VGRIDCFPAD TSKILLTSYD GSIRSVHLNN 180
  181 LQSEEVLTLK NEYDDSLGIS DCQFSYENPN VLFLTTLGGE FTTFDTRVKK SEYNLRRLAD 240
  241 KKIGSMAINP MRPYEIATGS LDRTLKIWDT RNLVKKPEWS QYEDYPSHEI VSTYDSRLSV 300
  301 SAVSYSPTDG TLVCNGYDDT IRLFDVKSRD HLSAKLEPKL TIQHNCQTGR WTSILKARFK 360
  361 PNKNVFAIAN MKRAIDIYNS EGQQLAHLPT ATVPAVISWH PLRNWIAGGN SSGKIFLFTD 420
  421 DSGTIKQEE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 70.221849
Match: 1erjA_
Description: Tup1, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.83286470399158 bayes_pls_golite062009
nucleic acid binding 1.2886835964948 bayes_pls_golite062009
transcription regulator activity 1.0160811807475 bayes_pls_golite062009
DNA binding 0.561578774129549 bayes_pls_golite062009
protein binding 0.522364360354028 bayes_pls_golite062009
transcription factor activity 0.00445255815744083 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle