| Protein: | LDB17 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 491 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LDB17.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..491] | [1..491] |
|
|
0.0 | [9..413] | [9..364] |
|
|
0.0 | [70..413] | [1..303] |
|
|
7.0E-57 | [221..389] | [620..783] |
|
|
1.0E-54 | [221..383] | [526..687] |
|
Region A: Residues: [1-164] |
1 11 21 31 41 51
| | | | | |
1 MILDPLSPNI ENHTQDEIIE FWEKTESIAN IPKENLDESH VNSSLVAYLK FATDSYKVFI 60
61 NTDRDLYRMS LILLESSLFE FKKEFCLSKL QSLLNIDLLE MNMKFIIVYI LLCEAKKNVY 120
121 SLEIMLKFQG FTVFYNTLYT QFAYLSKYGK ERTVASKHQY NSNN
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.444 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.465 | d.129.3 | Bet v1-like |
| View | Download | 0.489 | c.10.1 | RNI-like |
| View | Download | 0.442 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.489 | c.10.1 | RNI-like |
| View | Download | 0.483 | c.10.1 | RNI-like |
| View | Download | 0.465 | d.129.3 | Bet v1-like |
| View | Download | 0.444 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.442 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.442 | c.66.1 | S-adenosyl-L-methionine-dependent methyltransferases |
| View | Download | 0.425 | d.153.1 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) |
| View | Download | 0.412 | a.146.1 | Telomeric repeat binding factor (TRF) dimerisation domain |
| View | Download | 0.389 | a.118.1 | ARM repeat |
| View | Download | 0.387 | b.60.1 | Lipocalins |
| View | Download | 0.382 | a.118.8 | TPR-like |
| View | Download | 0.330 | a.182.1 | GatB/YqeY domain |
| View | Download | 0.328 | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.315 | a.23.2 | Diol dehydratase, gamma subunit |
| View | Download | 0.310 | a.69.2 | Ypt/Rab-GAP domain of gyp1p |
| View | Download | 0.291 | a.74.1 | Cyclin-like |
| View | Download | 0.290 | a.72.1 | Functional domain of the splicing factor Prp18 |
| View | Download | 0.279 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.270 | a.5.3 | N-terminal domain of phosphatidylinositol transfer protein sec14p |
| View | Download | 0.265 | d.211.2 | Plakin repeat |
| View | Download | 0.262 | c.52.3 | Eukaryotic RPB5 N-terminal domain |
| View | Download | 0.262 | a.79.1 | Antitermination factor NusB |
| View | Download | 0.257 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.252 | a.39.3 | Cloroperoxidase |
| View | Download | 0.240 | c.47.1 | Thioredoxin-like |
| View | Download | 0.234 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.231 | a.62.1 | Hepatitis B viral capsid (hbcag) |
| View | Download | 0.227 | d.122.1 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |
| View | Download | 0.225 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.225 | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.219 | d.153.1 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) |
| View | Download | 0.219 | a.26.1 | 4-helical cytokines |
| View | Download | 0.211 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.201 | d.143.1 | SAICAR synthase-like |
|
Region A: Residues: [165-415] |
1 11 21 31 41 51
| | | | | |
1 SSTGTSLDSL DRSLTDIDLG IIDEMKQIST VLMDLLFQIM KYCKCVIANL QIVDDFFVYY 60
61 MMESMRSDTM DDMFNNAEFK LLLALNEQYM MFAKEYDIEN KVYKYLINGS VSRCFTELLL 120
121 LKFNRASDPP LQIMMCKIIY LILTPRGDYS PMNFFYTNDL RVLIDVLIRE LQNISEDEEV 180
181 LRNTLLRVLI PLLKNTQLSK THYRKDDLNK LLNYLSTLDN ICVDSPALHE HQVTVALSRK 240
241 CLQQIPWLET P
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [416-491] |
1 11 21 31 41 51
| | | | | |
1 STPSDGGSSV SSNNTSRNSS IVALGTPDNQ NILARKGHLY SNRELDVSAE SLTKRKAKAP 60
61 PPPPPPPPSR KCGTPK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.495 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.556 | b.40.2 | Bacterial enterotoxins |
| View | Download | 0.556 | b.40.2 | Bacterial enterotoxins |
| View | Download | 0.524 | b.40.2 | Bacterial enterotoxins |
| View | Download | 0.524 | b.40.2 | Bacterial enterotoxins |
| View | Download | 0.495 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.376 | b.40.2 | Bacterial enterotoxins |
| View | Download | 0.376 | b.40.2 | Bacterial enterotoxins |
| View | Download | 0.360 | b.40.2 | Bacterial enterotoxins |
| View | Download | 0.360 | b.40.2 | Bacterial enterotoxins |
| View | Download | 0.326 | b.61.3 | D-aminopeptidase, middle and C-terminal domains |
| View | Download | 0.322 | g.7.1 | Snake toxin-like |
| View | Download | 0.246 | d.58.17 | Metal-binding domain |
