YRC Public Data Repository - Protein Structure Prediction

Protein:	RPP1B
Organism:	Saccharomyces cerevisiae
Length:	106 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPP1B.

Description	E-value	Query Range	Subject Range
gi\|10177851, gi\|... - gi\|67633816\|gb\|AAY78832.1\| putative 60S acidic ribosomal protein P1 [Arabidopsis thaliana], gi\|15238...	123.0	[0..2]	[106..4]
gi\|11141354 - gi\|11141354\|emb\|CAC16109.1\| acidic ribosomal protein 1 [Rana esculenta]	110.0	[0..1]	[106..4]
gi\|109084446 - gi\|109084446\|ref\|XP_001095290.1\| PREDICTED: similar to 60S acidic ribosomal protein P1 [Macaca mulat...	105.0	[0..1]	[106..139]
gi\|114654113, gi... - gi\|114654113\|ref\|XP_001163471.1\| PREDICTED: similar to ribosomal protein P1 isoform 2 [Pan troglodyt...	105.0	[0..1]	[106..4]
gi\|539412, gi\|227678 - gi\|539412\|pir\|\|A53221 acidic ribosomal protein P1 - hydromedusa (Polyorchis penicillatus), gi\|227678...	103.0	[0..2]	[106..7]
gi\|38086394, gi\|... - gi\|94408796\|ref\|XP_993025.1\| PREDICTED: similar to 60S acidic ribosomal protein P1 isoform 2 [Mus mu...	101.0	[0..1]	[106..4]
gi\|109081701 - gi\|109081701\|ref\|XP_001087245.1\| PREDICTED: similar to 60S acidic ribosomal protein P1 isoform 2 [Ma... gi\|57108305, gi\|... - gi\|74000657\|ref\|XP_866711.1\| PREDICTED: similar to 60S acidic ribosomal protein P1 isoform 4 [Canis ... RLA1_BOVIN - 60S acidic ribosomal protein P1 OS=Bos taurus GN=RPLP1 PE=3 SV=1 gi\|114683743, gi... - gi\|55642341\|ref\|XP_510509.1\| PREDICTED: similar to 60S acidic ribosomal protein P1 isoform 3 [Pan tr... CCDS10233.1_1 - null RPLP1 - ribosomal protein, large, P1	99.0	[0..1]	[106..4]
gi\|39582094, gi\|... - gi\|39582094\|emb\|CAE63737.1\| Hypothetical protein CBG08266 [Caenorhabditis briggsae], gi\|187032828\|em... gi\|157747115 - gi\|157747115\|ref\|XP_001668652.1\| Hypothetical protein CBG08266 [Caenorhabditis briggsae AF16]	98.0	[0..4]	[106..1]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSIISFAA FILADAGLEI TSDNLLTITK AAGANVDNVW ADVYAKALEG KDLKEILSGF  60
   61 HNAGPVAGAG AASGAAAAGG DAAAEEEKEE EAAEESDDDM GFGLFD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	39.677781
Match:	PF00428.10
Description:	No description for PF00428.10 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.518	N/A	N/A	a.100.1	6-phosphogluconate dehydrogenase C-terminal domain-like
View	Download	0.518	N/A	N/A	a.100.1	6-phosphogluconate dehydrogenase C-terminal domain-like
View	Download	0.507	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.423	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.358	N/A	N/A	a.144.2	Ribosomal protein L20
View	Download	0.354	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.354	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.343	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.285	N/A	N/A	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.271	N/A	N/A	a.118.8	TPR-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits