| Protein: | CDC48 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 835 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDC48.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [19..835] | [14..807] |
|
|
0.0 | [19..835] | [14..815] |
|
|
0.0 | [2..835] | [2..835] |
|
|
0.0 | [11..811] | [38..825] |
|
|
0.0 | [16..835] | [11..805] |
|
|
0.0 | [20..835] | [7..801] |
|
|
0.0 | [26..798] | [15..775] |
|
Region A: Residues: [1-117] |
1 11 21 31 41 51
| | | | | |
1 MGEEHKPLLD ASGVDPREED KTATAILRRK KKDNMLLVDD AINDDNSVIA INSNTMDKLE 60
61 LFRGDTVLVK GKKRKDTVLI VLIDDELEDG ACRINRVVRN NLRIRLGDLV TIHPCPD
|
| Detection Method: |  |
| Confidence: | 10138.0 |
| Match: | 1e32A_ |
| Description: | Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [118-210] |
1 11 21 31 41 51
| | | | | |
1 IKYATRISVL PIADTIEGIT GNLFDVFLKP YFVEAYRPVR KGDHFVVRGG MRQVEFKVVD 60
61 VEPEEYAVVA QDTIIHWEGE PINREDEENN MNE
|
| Detection Method: | |
| Confidence: | 10138.0 |
| Match: | 1e32A_ |
| Description: | Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [211-381] |
1 11 21 31 41 51
| | | | | |
1 VGYDDIGGCR KQMAQIREMV ELPLRHPQLF KAIGIKPPRG VLMYGPPGTG KTLMARAVAN 60
61 ETGAFFFLIN GPEVMSKMAG ESESNLRKAF EEAEKNAPAI IFIDEIDSIA PKRDKTNGEV 120
121 ERRVVSQLLT LMDGMKARSN VVVIAATNRP NSIDPALRRF GRFDREVDIG I
|
| Detection Method: | |
| Confidence: | 10138.0 |
| Match: | 1e32A_ |
| Description: | Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [382-459] |
1 11 21 31 41 51
| | | | | |
1 PDATGRLEVL RIHTKNMKLA DDVDLEALAA ETHGYVGADI ASLCSEAAMQ QIREKMDLID 60
61 LDEDEIDAEV LDSLGVTM
|
| Detection Method: | |
| Confidence: | 10138.0 |
| Match: | 1e32A_ |
| Description: | Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [460-641] |
1 11 21 31 41 51
| | | | | |
1 DNFRFALGNS NPSALRETVV ESVNVTWDDV GGLDEIKEEL KETVEYPVLH PDQYTKFGLS 60
61 PSKGVLFYGP PGTGKTLLAK AVATEVSANF ISVKGPELLS MWYGESESNI RDIFDKARAA 120
121 APTVVFLDEL DSIAKARGGS LGDAGGASDR VVNQLLTEMD GMNAKKNVFV IGATNRPDQI 180
181 DP
|
| Detection Method: | |
| Confidence: | 64.751666 |
| Match: | 1d2nA_ |
| Description: | Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [642-725] |
1 11 21 31 41 51
| | | | | |
1 AILRPGRLDQ LIYVPLPDEN ARLSILNAQL RKTPLEPGLE LTAIAKATQG FSGADLLYIV 60
61 QRAAKYAIKD SIEAHRQHEA EKEV
|
| Detection Method: | |
| Confidence: | 11.93 |
| Match: | 1d2nA |
| Description: | Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [726-835] |
1 11 21 31 41 51
| | | | | |
1 KVEGEDVEMT DEGAKAEQEP EVDPVPYITK EHFAEAMKTA KRSVSDAELR RYEAYSQQMK 60
61 ASRGQFSNFN FNDAPLGTTA TDNANSNNSA PSGAGAAFGS NAEEDDDLYS
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.272 | 0.179 | ER-associated protein catabolic process | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.289 | 0.030 | protein transport | b.88.1 | Mss4-like |
| View | Download | 0.324 | 0.022 | ER-associated protein catabolic process | a.116.1 | GTPase activation domain, GAP |
| View | Download | 0.259 | 0.003 | ER-associated protein catabolic process | a.142.1 | PTS-regulatory domain, PRD |
| View | Download | 0.236 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.232 | N/A | N/A | a.142.1 | PTS-regulatory domain, PRD |
| View | Download | 0.231 | N/A | N/A | f.27.1 | 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| View | Download | 0.204 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.203 | N/A | N/A | c.47.1 | Thioredoxin-like |
| View | Download | 0.201 | N/A | N/A | a.74.1 | Cyclin-like |
