YRC Public Data Repository - Protein Structure Prediction

Protein:	SNA4
Organism:	Saccharomyces cerevisiae
Length:	140 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNA4.

Description	E-value	Query Range	Subject Range
gi\|190405125 - gi\|190405125\|gb\|EDV08392.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] SNA4 - Protein of unknown function, localized to the vacuolar outer membrane; predicted to be palmitoylated SNA4_YEAST - Protein SNA4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNA4 PE=1 SV=1 gi\|151941880 - gi\|151941880\|gb\|EDN60236.1\| conserved protein [Saccharomyces cerevisiae YJM789]	1.0E-57	[1..140]	[1..140]
RC23_ARATH - UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana GN=At4g30650 PE=3 SV=1	1.0E-17	[13..70]	[8..65]
CE12682 - status:Predicted UniProt:P92009 protein_id:CAB03250.1	1.0E-17	[13..70]	[27..84]
gi\|125564680 - gi\|125564680\|gb\|EAZ10060.1\| hypothetical protein OsI_32364 [Oryza sativa Indica Group] OSR8_ORYSA - Hydrophobic protein OSR8 - Oryza sativa (Rice) OSR8_ORYSJ - Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica GN=OSR8 PE=3 SV=1	3.0E-16	[7..67]	[6..63]
gi\|25532448 - pir\|\|AE2280 stress induced hydrophobic peptide [imported] - Nostoc sp. (strain PCC 7120) gi\|17231288, gi\|... - gi\|17231288\|ref\|NP_487836.1\| stress induced hydrophobic peptide [Nostoc sp. PCC 7120], gi\|17132930\|d...	5.0E-16	[11..63]	[1..52]
gi\|125544049, gi... - gi\|125544049\|gb\|EAY90188.1\| hypothetical protein OsI_11752 [Oryza sativa Indica Group], gi\|125544046... gi\|113548671, gi... - gi\|34896280\|ref\|NP_909484.1\| putative low temperature and salt responsive protein [Oryza sativa], gi...	5.0E-15	[10..63]	[12..64]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCCYCVCCTV SDFILYIVAF FFPPAAVLLR SGPCSSDFLL NVLLTLLGFL PGMLHAFYYI  60
   61 TITSPLRNAE YVYYYQQGWV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	27.39794
Match:	PF01679
Description:	Uncharacterized protein family UPF0057

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [81-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSERNVPSNR PQNSQTPQNR PQQGSSARNV YPSVETPLLQ GAAPHDNKQS LVESPPPYVP  60
   61

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits