YRC Public Data Repository - Protein Structure Prediction

Protein:	SNU23
Organism:	Saccharomyces cerevisiae
Length:	194 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNU23.

Description	E-value	Query Range	Subject Range
SNU23_YEAST - 23 kDa U4/U6.U5 small nuclear ribonucleoprotein component OS=Saccharomyces cerevisiae (strain ATCC 2... gi\|151941905 - gi\|151941905\|gb\|EDN60261.1\| small nuclear ribonucleoprotein associated [Saccharomyces cerevisiae YJM... SNU23 - Component of U4/U6.U5 snRNP involved in mRNA splicing via spliceosome gi\|190405103 - gi\|190405103\|gb\|EDV08370.1\| hypothetical protein SCRG_00593 [Saccharomyces cerevisiae RM11-1a]	2.0E-66	[1..194]	[1..194]
gi\|14517383, gi\|... - gi\|18397358\|ref\|NP_566257.1\| nucleic acid binding / zinc ion binding [Arabidopsis thaliana], gi\|1545...	3.0E-44	[1..194]	[10..201]
CE00458 - WBGene00022794 status:Partially_confirmed SW:P34670 protein_id:AAA28220.1	5.0E-42	[6..194]	[207..407]
gi\|220954248, gi... - gi\|220954248\|gb\|ACL89667.1\| CG11586-PA [synthetic construct], gi\|220944376\|gb\|ACL84731.1\| CG11586-PA... CG11586-PA, FBpp... - This gene is referred to in FlyBase by the symbol Dmel\CG11586 (CG11586, FBgn0035520). It is a prote... gi\|194128412, gi... - gi\|195337405\|ref\|XP_002035319.1\| GM13992 [Drosophila sechellia], gi\|194128412\|gb\|EDW50455.1\| GM13992...	4.0E-40	[6..194]	[9..192]
gi\|114602176 - gi\|114602176\|ref\|XP_001140609.1\| PREDICTED: hypothetical protein [Pan troglodytes] tr\|G3I598\|G3I598... - Zinc finger matrin-type protein 2 OS=Cricetulus griseus GN=I79_018642 PE=4 SV=1 gi\|194219848 - gi\|194219848\|ref\|XP_001502341.2\| PREDICTED: similar to zinc finger, matrin type 2 [Equus caballus] tr\|G1SLE4\|G1SLE4... - pep:novel chromosome:oryCun2:3:22819773:22827697:1 gene:ENSOCUG00000004255 transcript:ENSOCUT0000000... ZMAT2 - zinc finger, matrin type 2 ENSCJAT00000031583 - null ZMAT2_MOUSE - Zinc finger matrin-type protein 2 OS=Mus musculus GN=Zmat2 PE=2 SV=1 gi\|73949322 - gi\|73949322\|ref\|XP_848938.1\| PREDICTED: similar to zinc finger, matrin type 2 isoform 1 [Canis famil... gi\|112362325, gi... - gi\|122692385\|ref\|NP_001073812.1\| zinc finger, matrin type 2 [Bos taurus], gi\|112362325\|gb\|AAI20368.1... gi\|109078923 - gi\|109078923\|ref\|XP_001086774.1\| PREDICTED: similar to zinc finger, matrin type 2 [Macaca mulatta] tr\|M3VWD5\|M3VWD5... - Zinc finger matrin-type 2 OS=Felis catus GN=ZMAT2 PE=4 SV=1	5.0E-40	[5..194]	[12..197]

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Predicted Domain #1

Region A:
Residues: [1-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNFGRRTWD REEYAEQARS GYDDRSLKAT LTPIELQALK SKYTNYDHLI KGSLKDLNKR  60
   61 KLTANTESLS SFKRGKKFGF YCDICNLTFK DTLQYIDHLN HKVHAIKFEN LFDEPLIIDI 120
  121 RDNDDVPQEE FELCYHNLIK DFVEVRSMET QSKRKRLLDT DVEKAKKVAT KPSIESESKV 180
  181 SQMMGFSNFA TSKK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits