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View Structure Prediction Details

Protein: ASM4
Organism: Saccharomyces cerevisiae
Length: 528 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ASM4.

Description E-value Query
Range
Subject
Range
ASM4 - Nuclear pore complex subunit, part of a subcomplex also containing Nup53p, Nup170p, and Pse1p
NUP59_YEAST - Nucleoporin ASM4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ASM4 PE=1 SV=1
0.0 [1..528] [1..528]
NUP40_SCHPO - Nucleoporin nup40 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nup40 PE=1 SV=1
nup40 - nucleoporin Nup40
6.0E-5 [267..425] [168..284]
gi|148226775, gi... - gi|15021902|dbj|BAB62226.1| tudor repeat protein Xtr [Xenopus laevis], gi|148226775|ref|NP_001082149...
5.0E-4 [4..218] [651..833]

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Predicted Domain #1
Region A:
Residues: [1-226]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGIRSGNNN GGFTNLTSQA PQTTQMFQSQ SQLQPQPQPQ PQQQQQHLQF NGSSDASSLR  60
   61 FGNSLSNTVN ANNYSSNIGN NSINNNNIKN GTNNISQHGQ GNNPSWVNNP KKRFTPHTVI 120
  121 RRKTTKQNSS SDINQNDDSS SMNATMRNFS KQNQDSKHNE RNKSAANNDI NSLLSNFNDI 180
  181 PPSVTLQDWQ REDEFGSIPS LTTQFVTDKY TAKKTNRSAY DSKNTP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [227-425]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVFDKDSYVR IANIEQNHLD NNYNTAETNN KVHETSSKSS SLSAIIVFGY PESISNELIE  60
   61 HFSHFGHIME DFQVLRLGRG INPNTFRIFH NHDTGCDEND STVNKSITLK GRNNESNNKK 120
  121 YPIFTGESWV KLTYNSPSSA LRALQENGTI FRGSLIGCIP YSKNAVEQLA GCKIDNVDDI 180
  181 GEFNVSMYQN SSTSSTSNT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [426-528]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSPPNVIITD GTLLREDDNT PAGHAGNPTN ISSPIVANSP NKRLDVIDGK LPFMQNAGPN  60
   61 SNIPNLLRNL ESKMRQQEAK YRNNEPAGFT HKLSNWLFGW NDL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle