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View Structure Prediction Details

Protein: RPL13A
Organism: Saccharomyces cerevisiae
Length: 199 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL13A.

Description E-value Query
Range
Subject
Range
gi|126631288, gi... - gi|147900871|ref|NP_001091406.1| hypothetical protein LOC100049095 [Xenopus laevis], gi|126631288|gb...
RL13_MOUSE - 60S ribosomal protein L13 OS=Mus musculus GN=Rpl13 PE=1 SV=3
6.0E-66 [1..199] [1..211]
gi|13592055, gi|... - gi|510552|emb|CAA55130.1| ribosomal protein L13 [Rattus norvegicus], gi|13592055|ref|NP_112363.1| ri...
2.0E-65 [1..199] [1..211]
gi|123995921, gi... - gi|60656421|gb|AAX32774.1| ribosomal protein L13 [synthetic construct], gi|123995921|gb|ABM85562.1| ...
RPL13 - ribosomal protein L13
1.0E-64 [1..199] [1..211]
RL13_CRIGR - 60S ribosomal protein L13 OS=Cricetulus griseus GN=RPL13 PE=2 SV=3
3.0E-64 [1..199] [1..211]
RL13_CHICK - 60S ribosomal protein L13 OS=Gallus gallus GN=RPL13 PE=2 SV=2
6.0E-64 [1..199] [1..211]
gi|7248415, gi|2... - gi|7248415|dbj|BAA92738.1| putative 60S ribosomal protein L13E [Oryza sativa Japonica Group], gi|348...
gi|149391053, gi... - gi|149391053|gb|ABR25544.1| 60S ribosomal protein l13-2 [Oryza sativa (indica cultivar-group)], gi|1...
8.0E-63 [3..186] [2..198]
RL13_ICTPU - 60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3
1.0E-62 [1..199] [1..211]

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Predicted Domain #1
Region A:
Residues: [1-199]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAISKNLPIL KNHFRKHWQE RVKVHFDQAG KKVSRRNARA TRAAKIAPRP LDLLRPVVRA  60
   61 PTVKYNRKVR AGRGFTLAEV KAAGLTAAYA RTIGIAVDHR RQNRNQEIFD ANVQRLKEYQ 120
  121 SKIIVFPRNG KAPEAEQVLS AAATFPIAQP ATDVEARAVQ DNGESAFRTL RLARSEKKFR 180
  181 GIREKRAREK AEAEAEKKK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 119.148742
Match: PF01294
Description: Ribosomal protein L13e

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle