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View Structure Prediction Details

Protein: TSR1
Organism: Saccharomyces cerevisiae
Length: 788 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TSR1.

Description E-value Query
Range
Subject
Range
gi|7243183 - gi|7243183|dbj|BAA92639.1| KIAA1401 protein [Homo sapiens]
883.0 [0..1] [785..50]
gi|109112682 - gi|109112682|ref|XP_001086730.1| PREDICTED: similar to Temporarily Assigned Gene name family member ...
857.0 [0..1] [785..1]
TSR1_PONAB - Pre-rRNA-processing protein TSR1 homolog OS=Pongo abelii GN=TSR1 PE=2 SV=1
gi|55733611 - gi|55733611|emb|CAH93482.1| hypothetical protein [Pongo abelii]
857.0 [0..1] [785..1]
SPAC23H4.15 - ribosome biogenesis protein Tsr1
TSR1_SCHPO - Ribosome biogenesis protein tsr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tsr1 PE=3...
833.0 [0..3] [781..2]
gi|73967379 - gi|73967379|ref|XP_548321.2| PREDICTED: similar to CG7338-PA [Canis familiaris]
831.0 [0..1] [785..89]
gi|27819797 - gi|27819797|gb|AAO24947.1| RE60845p [Drosophila melanogaster]
820.0 [0..1] [779..1]

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Predicted Domain #1
Region A:
Residues: [1-79]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGHSHRSSL KNGHKSYKSK HASKGALKRL YKGKVEKEPV GTGKPDKQVS KLQRKNKAKQ  60
   61 LRAQRILDSI ENRKLFEGK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [80-310]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGAAKIITIV PLVNDLDPLD ILYKLLKCAD DEGIMVQEVD SKRIFNVHIK KFKSNLKIII  60
   61 PDMTNFLNIL DCAKVADFVV FGLSGVQEVD EEFGEQIIRA LELQGIASYI GVISNLSAVH 120
  121 EKEKFQLDVK QSLESYFKHF FPSEERVYNL EKNSDALNVL RTLCQRLPRS INWRDNRGYV 180
  181 VADFVDFVET SPDSGDLVIE GTVRGIGFNA NRLVHIPDFG DFQLNKIEKI S

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 9.6
Match:
Description: No description for 1d2eA was found.

Predicted Domain #3
Region A:
Residues: [311-511]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESSQKRKIIK EKATDSLSLE LDLQTVFESN MNRDTLDEYA PEGTEDWSDY DEDFEYDGLT  60
   61 TARYDDHGFL PGREQTSKKA AVPKGTSDYQ AKWYLDDVID ANEEEEAEQT NGKDETMMEI 120
  121 DDEMMVEQDN EEVAGDEEYD IEDNEGFEEL SPEEEERQLR EFRDMEKEDR EFPDEIELEP 180
  181 SESAIERLKR YRGLKNLYNC D

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [512-788]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WQVDEKDPSS PAEWKRLLRI GNYKNTKNRI IKETKNEAQA IAGDRIRMFI RFPKFLLEKI  60
   61 QDPKQLLFAV YGLLLHEHKN AVVNFSLQRW EQYDKPVPSQ EPIVVQYGVR RYTIQPLFSQ 120
  121 GSNSPNNVHK YERFLHPDTV SVATCIAPVD FTQSPAIFFK PSPTDAKNIE LIGHGTFLNA 180
  181 DHSRILAKRA ILTGHPFRFH KTVVTVRYMF FRPEDVEWFK SIPLFTKSGR SGFIKESLGT 240
  241 HGYFKATFDG KLSAQDVVAM SLYKRMWPMP SLPWNGM

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle