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View Structure Prediction Details

Protein: STP4
Organism: Saccharomyces cerevisiae
Length: 490 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for STP4.

Description E-value Query
Range
Subject
Range
ZNF347 - zinc finger protein 347
gi|208968133 - gi|208968133|dbj|BAG73905.1| zinc finger protein 347 [synthetic construct]
0.0 [9..490] [270..793]
ZN252_CANLF - Zinc finger protein 252 OS=Canis lupus familiaris GN=ZNF252 PE=2 SV=1
0.0 [9..490] [274..820]
gi|15929737, gi|... - gi|21703954|ref|NP_663458.1| zinc finger protein 160 [Mus musculus], gi|15929737|gb|AAH15291.1| Zinc...
0.0 [12..488] [130..648]

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Predicted Domain #1
Region A:
Residues: [1-125]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVSSSFASS IDSVMSHETM SLRRNPPFID TPEKMPNPTA SPNGTIHHLI DPSLPLLSST  60
   61 TSSSRSTLSS TLNSPPPPPL TTSYSSYNSS ACQSITSSPT DNTALAHNSK CYFPHSLSPT 120
  121 PLSSN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.203 0.739 nucleus a.4.1 Homeodomain-like
View Download 0.249 0.426 mitochondrion a.1.1 Globin-like
View Download 0.212 0.055 cytoplasm a.118.9 ENTH/VHS domain
View Download 0.212 0.017 nucleus a.25.1 Ferritin-like
View Download 0.322 0.001 mitochondrion a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain
View Download 0.307 0.001 mitochondrion f.14.1 Voltage-gated potassium channels
View Download 0.214 0.000 mitochondrion a.81.1 N-terminal domain of DnaB helicase

Predicted Domain #2
Region A:
Residues: [126-237]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSSHVILPPI SSFTNLITVA EREFNGRSNS LHANFTSPVP RTVLDHHRHE LTFCNPNNTT  60
   61 GFKTITPSPP TQHQSILPTA VDNVPRSKSV SSLPVSGFPP LIVKQQQQQQ LN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.277 0.832 mitochondrion a.24.3 Cytochromes
View Download 0.296 0.001 mitochondrion a.4.6 C-terminal effector domain of the bipartite response regulators
View Download 0.247 0.000 mitochondrion a.39.2 Insect pheromon/odorant-binding proteins
View Download 0.251 0.000 mitochondrion f.36.1 Neurotransmitter-gated ion-channel pransmembrane pore
View Download 0.227 N/A N/A a.24.9 alpha-catenin/vinculin
View Download 0.220 N/A N/A a.24.9 alpha-catenin/vinculin
View Download 0.211 N/A N/A a.24.9 alpha-catenin/vinculin

Predicted Domain #3
Region A:
Residues: [238-351]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSSSASALPS IHSPLTNEHT SRYSSSLKDS AKITKQRKKK ECPICHNFYA NLSTHKSTHL  60
   61 TPEDRPHKCP ICQRGFARNN DLIRHKKRHW KDEFMQIYAR ESDNNSGADD QDDT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.39794
Match: 1meyC_
Description: Designed zinc finger protein
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [352-490]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ARTSANNDSD DSNDKLAASS SSEETKLLKK NQLKSLYKIK GAFKCPYNST LINLDMEVYP  60
   61 HKSRSLYFEP INCHQTGVFS RCDTFKNHLK ALHFEYPPKT KKEDRGVVPG KCKHCGLQFP 120
  121 NVDVWLNKHV GKGCGYSYH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 44.9897
Match: 1a1fA_
Description: ZIF268
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle