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View Structure Prediction Details

Protein: YDL038C
Organism: Saccharomyces cerevisiae
Length: 583 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDL038C.

Description E-value Query
Range
Subject
Range
ZAN_MOUSE - Zonadhesin OS=Mus musculus GN=Zan PE=1 SV=1
250.0 [0..9] [565..546]
TCNA_TRYCR - Sialidase OS=Trypanosoma cruzi GN=TCNA PE=2 SV=1
239.0 [0..5] [565..577]
gi|16554449, gi|... - gi|16554449|ref|NP_003377.1| zonadhesin isoform 3 [Homo sapiens], gi|12667414|gb|AAK01433.1|AF332977...
237.0 [0..63] [551..531]

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Predicted Domain #1
Region A:
Residues: [1-278]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYRTRSSDEV TTSTDLTSSS DVATSVDPTT SVISSTSADP TTSADSTTST VQTTSAGPSN  60
   61 NIGNSTLANS TTFAVSSTSI DPTSSSDVIT STVQTTSIEP TTSLVSSNDI TTSTSLNISV 120
  121 VISTSTDSTS LIESTTTVGP HASSSVAGMY RTRSSDEVTT STDPTSSSDV ATSADPTSSS 180
  181 AVTTLVDPTT SVVISTSVDQ TSSSDVATSV DPTTSVISST SADPTTSADS TTSTVQTTSV 240
  241 DPTSSVVSSA PVDPASSVVS LTSSYPTSSS TVTISANS

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 13.37
Match:
Description: No description for 1m2vB was found.

Predicted Domain #2
Region A:
Residues: [279-349]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGSATLAAQT TSIDPVSSIV SSSGATTIIS SASIDPASSV VSSTSSEPTS FIVSSTSVYS  60
   61 TRPSGPTTST D

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.835 N/A N/A d.68.3 SirA-like

Predicted Domain #3
Region A:
Residues: [350-583]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LATFSDTIIL RVSTTSTSQD TQTVSSSLTD MVSSTGSADL SVSSIQRSQV DPSTFAVSNS  60
   61 PVYPTASTGS TSTGIPIASE SLSLSRQQGI SATSSSSIVT LTPVDSASSS RSSATSIIKP 120
  121 NMPVSSNDSK TQSSVSVVDA FQSTKSSYPS ITSADPTTLA SENGLVGSSS SAHPITLDRT 180
  181 YASAHASVTD IVSRVTDSTR HTTLVTSNIN IQSEVGNQIT RVPKTLPSPN NLHL

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 11.62
Match:
Description: No description for 1deqA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle