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View Structure Prediction Details

Protein: YDL027C
Organism: Saccharomyces cerevisiae
Length: 420 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDL027C.

Description E-value Query
Range
Subject
Range
gi|683670 - gi|683670|emb|CAA88332.1| unknown [Saccharomyces cerevisiae]
482.0 [0..1] [264..1]
gi|49527608 - gi|49527608|emb|CAG61257.1| unnamed protein product [Candida glabrata]
gi|49527608, gi|... - gi|50291727|ref|XP_448296.1| unnamed protein product [Candida glabrata], gi|49527608|emb|CAG61257.1|...
74.0 [0..47] [267..44]
gi|49641502 - gi|49641502|emb|CAH01220.1| KLLA0C03872p [Kluyveromyces lactis]
gi|49641502, gi|... - gi|50304827|ref|XP_452369.1| unnamed protein product [Kluyveromyces lactis], gi|49641502|emb|CAH0122...
57.0 [0..96] [417..78]

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Predicted Domain #1
Region A:
Residues: [1-278]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKVPVGLAS RTRELMNSVT LNSLNNGKGF NMYLPGILRA FPKPVPSAIT SPAIPKYRGE  60
   61 SFQFRKLSCI SSNYCSTTHQ FLSSLKSSTS RLVGKRAFHS SRRAEIKFIF SSKSPKNGNK 120
  121 PFVKVYKVSP FFIIFATASI FTFILTSTIV VIPLIFHFFF PLLIMFFFFK QFKKWQKNIF 180
  181 YKDVLTSLPK TKLKITLPTM RSLQLQPMVQ SWKEISSRMG IPNEFAKGLN VDLVKQEETR 240
  241 KQFLSFLQKR VLESFTKNEL GIRSYFLGDS VEKWIKES

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [279-420]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YDLELDIDNC RSELRKFQTF IFSSVRYKLY LDSMKNLPLN PSKKLEGKKH IADVYVIILD  60
   61 ESFPAIMFNG GAYSKADFFK ILQESETSNS SKTLNTIIAI KSVNTLLSKH FVITTNGDSG 120
  121 EFFSKYNISK INDKNTEYTL KE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.601 d.38.1 Thioesterase/thiol ester dehydrase-isomerase
View Download 0.529 d.20.1 UBC-like
View Download 0.506 d.20.1 UBC-like
View Download 0.433 b.26.1 SMAD/FHA domain
View Download 0.433 b.26.1 SMAD/FHA domain
View Download 0.425 a.45.1 Glutathione S-transferase (GST), C-terminal domain
View Download 0.417 a.1.1 Globin-like
View Download 0.376 a.45.1 Glutathione S-transferase (GST), C-terminal domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle