| Protein: | RPN4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 531 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPN4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..531] | [1..531] |
|
|
0.0 | [139..525] | [78..458] |
|
Region A: Residues: [1-305] |
1 11 21 31 41 51
| | | | | |
1 MASTELSLKR TLTDILEDEL YHTNPGHSQF TSHYQNYHPN ASITPYKLVN KNKENNTFTW 60
61 NHSLQHQNES SAASIPPQQT YHFPIFNKYA DPTLTTTTSF TTSEATANDR QINNVHLIPN 120
121 EIKGASETPL QKTVNLKNIM KVSDPYVPTR NTFNYDVKIS NDFFDNGDNL YGNDEEVLFY 180
181 EDNYNPKMQW SLQDNSAAIN NEDARAIFNN EFDSDDDDIS DDEEDEIEEN CLQQEQHQEE 240
241 PLLSLDVTPI SMFGSDQKTG RAKSSSHLFN EYSYVDSNMD SISSVVSEDL LDERGHEKIE 300
301 DEDED
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [306-377] |
1 11 21 31 41 51
| | | | | |
1 NDLDEDDIYD ISLLKNRRKQ SFVLNKNTID FERFPSPSTS ANVPSTATTG KRKPAKSSSN 60
61 RSCVSNSNEN GT
|
| Detection Method: | |
| Confidence: | 25.045757 |
| Match: | 1meyG_ |
| Description: | Designed zinc finger protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [378-446] |
1 11 21 31 41 51
| | | | | |
1 LERIKKPTSA VVSSNASRRK LINYTKKHLS SHSSTNSNSK PSTASPSAHT SSSDGNNEIF 60
61 TCQIMNLIT
|
| Detection Method: | |
| Confidence: | 11.69897 |
| Match: | 1tf3A_ |
| Description: | Transcription factor IIIA, TFIIIA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [447-531] |
1 11 21 31 41 51
| | | | | |
1 NEPCGAQFSR SYDLTRHQNT IHAKRKIVFR CSECIKILGS EGYQKTFSRL DALTRHIKSK 60
61 HEDLSLEQRQ EVTKFAKANI GYVMG
|
| Detection Method: | |
| Confidence: | 44.529817 |
| Match: | 1a1iA_ |
| Description: | ZIF268 |
Matching Structure (courtesy of the PDB): |
|
