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View Structure Prediction Details

Protein: ERP3
Organism: Saccharomyces cerevisiae
Length: 225 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ERP3.

Description E-value Query
Range
Subject
Range
TMED4_MOUSE - Transmembrane emp24 domain-containing protein 4 OS=Mus musculus GN=Tmed4 PE=1 SV=1
3.0E-54 [9..221] [15..225]
gi|17064083 - gi|17064083|gb|AAL35268.1|AF441399_1 p25 [Homo sapiens]
3.0E-53 [10..221] [3..212]
CE24533 - status:Confirmed UniProt:Q9U1Z4 protein_id:CAB60397.1
7.0E-51 [10..221] [3..209]
TMEDA_RABIT - Transmembrane emp24 domain-containing protein 10 OS=Oryctolagus cuniculus GN=TMED10 PE=1 SV=1
2.0E-47 [8..221] [16..216]
P24D3_ARATH - Transmembrane emp24 domain-containing protein p24delta3 OS=Arabidopsis thaliana GN=At1g09580 PE=1 SV...
3.0E-47 [8..221] [15..215]
TMEDA_MESAU - Transmembrane protein Tmp21 OS=Mesocricetus auratus GN=TMED10 PE=1 SV=1
4.0E-47 [9..221] [17..216]

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Predicted Domain #1
Region A:
Residues: [1-225]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNLCVLFFQ FFFLAQFFAE ASPLTFELNK GRKECLYTLT PEIDCTISYY FAVQQGESND  60
   61 FDVNYEIFAP DDKNKPIIER SGERQGEWSF IGQHKGEYAI CFYGGKAHDK IVDLDFKYNC 120
  121 ERQDDIRNER RKARKAQRNL RDSKTDPLQD SVENSIDTIE RQLHVLERNI QYYKSRNTRN 180
  181 HHTVCSTEHR IVMFSIYGIL LIIGMSCAQI AILEFIFRES RKHNV

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 75.958607
Match: PF01105
Description: emp24/gp25L/p24 family/GOLD

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [150-225]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSVENSIDTI ERQLHVLERN IQYYKSRNTR NHHTVCSTEH RIVMFSIYGI LLIIGMSCAQ  60
   61 IAILEFIFRE SRKHNV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle