YRC Public Data Repository - Protein Structure Prediction

Protein:	NOP1
Organism:	Saccharomyces cerevisiae
Length:	327 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NOP1.

Description	E-value	Query Range	Subject Range
gi\|2982266 - gi\|2982266\|gb\|AAC32120.1\| probable fibrillarin [Picea mariana]	0.0	[79..323]	[1..239]
gi\|18044582, gi\|... - gi\|34785019\|gb\|AAH15218.2\| FBL protein [Homo sapiens], gi\|18044582\|gb\|AAH19609.1\|AAH19609 Unknown (p...	0.0	[62..327]	[1..259]
gi\|6003681 - gi\|6003681\|gb\|AAF00542.1\| fibrillarin homolog [Arabidopsis thaliana]	0.0	[24..327]	[7..306]
gi\|63146635, gi\|... - gi\|63146635\|gb\|AAY34144.1\| fibrillarin [Euglena gracilis], gi\|4240554\|gb\|AAD13616.1\| fibrillarin [Eu...	0.0	[48..327]	[3..281]
gi\|8050502 - gi\|8050502\|gb\|AAF71690.1\|AF168719_1 fibrillarin [Trypanosoma brucei rhodesiense]	0.0	[28..325]	[2..296]
gi\|25328938, gi\|... - pir\|\|E90129 fibrillarin like-protein [imported] - Guillardia theta nucleomorph, gi\|162605808\|ref\|XP_...	0.0	[81..320]	[20..253]
FBRL_ENCCU - rRNA 2'-O-methyltransferase fibrillarin OS=Encephalitozoon cuniculi (strain GB-M1) GN=NOP1 PE=3 SV=1 FBRL_ENCCU - rRNA 2'-O-methyltransferase fibrillarin OS=Encephalitozoon cuniculi GN=NOP1 PE=3 SV=1	0.0	[44..327]	[7..282]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFRPGSRGG SRGGSRGGFG GRGGSRGGAR GGSRGGFGGR GGSRGGARGG SRGGFGGRGG  60
   61 SRGGARGGSR GGRGGAAGGA RGG

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	7.97
Match:	1la5A
Description:	No description for 1la5A was found.

Predicted Domain #2

Region A:
Residues: [84-327]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKVVIEPHRH AGVYIARGKE DLLVTKNMAP GESVYGEKRI SVEEPSKEDG VPPTKVEYRV  60
   61 WNPFRSKLAA GIMGGLDELF IAPGKKVLYL GAASGTSVSH VSDVVGPEGV VYAVEFSHRP 120
  121 GRELISMAKK RPNIIPIIED ARHPQKYRML IGMVDCVFAD VAQPDQARII ALNSHMFLKD 180
  181 QGGVVISIKA NCIDSTVDAE TVFAREVQKL REERIKPLEQ LTLEPYERDH CIVVGRYMRS 240
  241 GLKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	491.29073
Match:	1fbnA_
Description:	Fibrillarin homologue
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits