YRC Public Data Repository - Protein Structure Prediction

Protein:	YDL012C
Organism:	Saccharomyces cerevisiae
Length:	107 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDL012C.

Description	E-value	Query Range	Subject Range
gi\|49526755 - gi\|49526755\|emb\|CAG60382.1\| unnamed protein product [Candida glabrata] gi\|49526755, gi\|... - gi\|50290027\|ref\|XP_447445.1\| hypothetical protein CAGL0I04510g [Candida glabrata CBS138], gi\|4952675...	57.0	[0..1]	[107..1]
gi\|45190815, gi\|... - gi\|45190815\|ref\|NP_985069.1\| AER212Wp [Ashbya gossypii ATCC 10895], gi\|44983857\|gb\|AAS52893.1\| AER21... gi\|44983857 - gi\|44983857\|gb\|AAS52893.1\| AER212Wp [Ashbya gossypii ATCC 10895]	49.0	[0..1]	[107..1]
gi\|50304881, gi\|... - gi\|50304881\|ref\|XP_452396.1\| unnamed protein product [Kluyveromyces lactis], gi\|49641529\|emb\|CAH0124...	47.0	[0..1]	[107..1]
gi\|119187263, gi... - gi\|90303024\|gb\|EAS32655.1\| hypothetical protein CIMG_03679 [Coccidioides immitis RS], gi\|119187263\|r...	46.0	[0..7]	[80..692]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAQDYYGNS ASKQSYSRPS APPPGYETAS RGYAPSQSQQ NYYPPQQQQQ QYQQQPQYYQ  60
   61 QQQPQYYQQH PQQPIYVQQQ PASSGNEDCL AGCLAGLCLC CTLDMLF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.441	c.23.1	CheY-like
View	Download	0.441	c.23.1	CheY-like
View	Download	0.336	c.44.2	Enzyme IIB-cellobiose
View	Download	0.336	c.44.2	Enzyme IIB-cellobiose
View	Download	0.288	a.4.1	Homeodomain-like
View	Download	0.285	c.23.5	Flavoproteins
View	Download	0.285	c.23.5	Flavoproteins
View	Download	0.249	a.118.8	TPR-like
View	Download	0.247	a.118.8	TPR-like
View	Download	0.215	c.98.2	HPr kinase/phoshatase HprK N-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits