YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: RPT2
Organism: Saccharomyces cerevisiae
Length: 437 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPT2.

Description E-value Query
Range
Subject
Range
PRS4_MOUSE - 26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1
gi|113931412, gi... - gi|89272512|emb|CAJ83548.1| proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Xenopus tropical...
gi|194038242 - gi|194038242|ref|XP_001928020.1| PREDICTED: proteasome (prosome, macropain) 26S subunit, ATPase, 1 [...
PSMC1 - proteasome (prosome, macropain) 26S subunit, ATPase, 1
gi|114654359 - gi|114654359|ref|XP_510114.2| PREDICTED: similar to P26s4 isoform 3 [Pan troglodytes]
gi|133778179 - gi|133778179|gb|AAI23488.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Bos taurus]
gi|194225274 - gi|194225274|ref|XP_001494140.2| PREDICTED: proteasome (prosome, macropain) 26S subunit, ATPase, 1 [...
gi|61359339, gi|... - gi|61359339|gb|AAX41703.1| proteasome 26S subunit 1 [synthetic construct], gi|61359333|gb|AAX41702.1...
PRS4_RAT - 26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1
ENSMMUT000000323... - null, null
0.0 [1..437] [1..440]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.0 [1..437] [1..440]
gi|207346882 - gi|207346882|gb|EDZ73241.1| YDL007Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|190405027 - gi|190405027|gb|EDV08294.1| one of the ATPase subunits of the proteasome [Saccharomyces cerevisiae R...
gi|151941983 - gi|151941983|gb|EDN60339.1| proteasome ATPase subunit [Saccharomyces cerevisiae YJM789]
ORFP:3720 - YDL007W, Contig c96 53094-54407
RPT2 - One of six ATPases of the 19S regulatory particle of the 26S proteasome involved in the degradation ...
PRS4_YEAST - 26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G...
0.0 [1..437] [1..437]
gi|16741033 - gi|16741033|gb|AAH16368.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Homo sapiens]
0.0 [1..437] [1..440]
Y1297_ARCFU - Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 ...
Y1297_ARCFU, YC9... - (O28972) Cell division cycle protein 48 homolog AF1297, Cell division cycle protein 48 homolog AF_12...
0.0 [14..436] [289..722]
PRS4_CHICK - 26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2 SV=1
0.0 [1..437] [1..440]
gi|18159541, gi|... - gi|18312110|ref|NP_558777.1| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum aerophilum str....
0.0 [14..436] [286..708]
PRS4B_ARATH - 26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis thaliana GN=RPT2B PE=1 SV=1
0.0 [1..437] [1..443]
gi|18479040 - gi|18479040|gb|AAL73395.1|AF432345_1 26S proteasome regulatory subunit IV [Tortula ruralis]
0.0 [1..437] [1..446]

Back

Predicted Domain #1
Region A:
Residues: [1-178]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQGVSSGQD KKKKKGSNQK PKYEPPVQSK FGRKKRKGGP ATAEKLPNIY PSTRCKLKLL  60
   61 RMERIKDHLL LEEEFVSNSE ILKPFEKKQE EEKKQLEEIR GNPLSIGTLE EIIDDDHAIV 120
  121 TSPTMPDYYV SILSFVDKEL LEPGCSVLLH HKTMSIVGVL QDDADPMVSV MKMDKSPT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 623.450636
Match: 1e32A_
Description: Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [179-352]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESYSDIGGLE SQIQEIKESV ELPLTHPELY EEMGIKPPKG VILYGAPGTG KTLLAKAVAN  60
   61 QTSATFLRIV GSELIQKYLG DGPRLCRQIF KVAGENAPSI VFIDEIDAIG TKRYDSNSGG 120
  121 EREIQRTMLE LLNQLDGFDD RGDVKVIMAT NKIETLDPAL IRPGRIDRKI LFEN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 623.450636
Match: 1e32A_
Description: Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [353-437]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDLSTKKKIL GIHTSKMNLS EDVNLETLVT TKDDLSGADI QAMCTEAGLL ALRERRMQVT  60
   61 AEDFKQAKER VMKNKVEENL EGLYL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 623.450636
Match: 1e32A_
Description: Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle