YRC Public Data Repository - Protein Structure Prediction

Protein:	RMD1
Organism:	Saccharomyces cerevisiae
Length:	430 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RMD1.

Description	E-value	Query Range	Subject Range
gi\|45190603, gi\|... - gi\|45190603\|ref\|NP_984857.1\| AEL004Wp [Ashbya gossypii ATCC 10895], gi\|44983582\|gb\|AAS52681.1\| AEL00... gi\|44983582 - gi\|44983582\|gb\|AAS52681.1\| AEL004Wp [Ashbya gossypii ATCC 10895]	502.0	[0..19]	[427..76]
gi\|63054420 - gi\|63054420\|ref\|NP_587910.2\| hypothetical protein SPCC5E4.09 [Schizosaccharomyces pombe 972h-] sif2 - Sad1 interacting factor 2	461.0	[0..66]	[423..6]
gi\|50294782, gi\|... - gi\|50294782\|ref\|XP_449802.1\| hypothetical protein CAGL0M10483g [Candida glabrata CBS138], gi\|4952911... gi\|49529116 - gi\|49529116\|emb\|CAG62780.1\| unnamed protein product [Candida glabrata]	453.0	[0..10]	[401..4]
gi\|49643868 - gi\|49643868\|emb\|CAG99820.1\| KLLA0E17381p [Kluyveromyces lactis] gi\|50309451, gi\|... - gi\|50309451\|ref\|XP_454733.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643868\|emb\|CAG9982...	446.0	[0..53]	[429..68]
gi\|49646393, gi\|... - gi\|50545980\|ref\|XP_500527.1\| YALI0B05390p [Yarrowia lipolytica], gi\|49646393\|emb\|CAG82758.1\| unnamed... gi\|49646393 - gi\|49646393\|emb\|CAG82758.1\| YALI0B05390p [Yarrowia lipolytica]	423.0	[0..57]	[427..45]
gi\|49656816, gi\|... - gi\|50425111\|ref\|XP_461147.1\| hypothetical protein DEHA0F19558g [Debaryomyces hansenii CBS767], gi\|49...	405.0	[0..5]	[426..2]
orf19.10667, orf... - orf19.3158 CGDID:CAL0002345 Assembly 19, Contig19-10169 (14612, 13185) CDS, reverse complemented, tr... gi\|46431650, gi\|... - gi\|68491531\|ref\|XP_710440.1\| hypothetical protein CaO19.3158 [Candida albicans SC5314], gi\|68491513\|...	382.0	[0..27]	[427..56]
gi\|116207758, gi... - gi\|88183769\|gb\|EAQ91237.1\| hypothetical protein CHGG_03172 [Chaetomium globosum CBS 148.51], gi\|1162...	369.0	[0..66]	[425..118]
gi\|40739507, gi\|... - gi\|67540286\|ref\|XP_663917.1\| hypothetical protein AN6313.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	356.0	[0..3]	[427..416]
gi\|169621173, gi... - gi\|169621173\|ref\|XP_001803997.1\| hypothetical protein SNOG_13794 [Phaeosphaeria nodorum SN15], gi\|11...	356.0	[0..22]	[428..53]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDSNDDQPE RHALLHNDIQ TSNNSRPSLV QKKYLPTPQD TRKSRASYTG SAMINPTSKQ  60
   61 SRTGSGAQRT SRTAQKLKLL PEEPFQRDSE RLTDLKNQEV YSQVNRIKDK PARRDAEKLG 120
  121 KAHRHL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [127-430]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPRSTAYCTA SSYNMKELVR WLKDCRKLHH THPKLFDECL YTPFIYNDWR GDKRFEDEDV  60
   61 IRLDDEGGEI IVSDKHPDLF IFEYGVVVMW GFTEREEKAF LNDIEKFEKE KLAEEDIQVE 120
  121 EFNYYVTKSY QPRIYNDFIT LRDGSNYMVK LSISHAIAQS VKISLFEELV DNTIEDTQDI 180
  181 PQEIAYSGKV SMSKEDIMKS IGELFILRIN INLHGSVLDS PEIMWSEPQL EPIYQATRGY 240
  241 LEINQRVSLL NQRLEVISDL LQMLKEQLGH SHEEYLEFIV ILLVGVEVLI SVINIVVDML 300
  301 ASQH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	171.886057
Match:	PF02582
Description:	Uncharacterised ACR, YagE family COG1723

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits