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View Structure Prediction Details

Protein: LUG1
Organism: Saccharomyces cerevisiae
Length: 153 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LUG1.

Description E-value Query
Range
Subject
Range
YC16_YEAST - UPF0743 protein YCR087C-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR087C-A PE=1...
LUG1 - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th...
9.0E-47 [1..153] [1..153]
gi|16041815, gi|... - gi|8923398|ref|NP_060286.1| Ly1 antibody reactive homolog [Homo sapiens], gi|7020518|dbj|BAA91162.1|...
HGNC:26021|Ensem... - antibody reactive homolog (mouse)
gi|208965202 - gi|208965202|dbj|BAG72615.1| Ly1 antibody reactive homolog [synthetic construct]
2.0E-46 [1..130] [1..143]
gi|18033305 - gi|18033305|gb|AAL57050.1|AF332588_1 cell growth-regulating nucleolar protein [Danio rerio]
2.0E-44 [1..133] [1..146]
gi|13384622, gi|... - gi|13384622|ref|NP_079557.1| Ly1 antibody reactive clone [Mus musculus], gi|12839441|dbj|BAB24554.1|...
3.0E-44 [1..130] [1..143]
CE01499 - cell growth regulating protein status:Confirmed UniProt:Q09464 protein_id:CAA86746.1
6.0E-42 [1..130] [1..141]
UBA1C_ARATH - UBP1-associated proteins 1C OS=Arabidopsis thaliana GN=UBA1C PE=3 SV=2
7.0E-29 [1..72] [1..71]
YH56_SCHPO - UPF0743 protein C215.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC215.06c PE=1 ...
SPBC215.06c - human LYHRT homolog
1.0E-20 [8..74] [6..71]

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Predicted Domain #1
Region A:
Residues: [1-153]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTFNCEVCN DTVPKKNTEK HYYRCPNAYY TCIDCSKTFE DGVSYKNHTS CISEDEKYQK  60
   61 ALYKGNKKQK QKQQQKQQQK QHQHQPVATP AKKVEKPVIK KAEKVEKTSN GIELHKGKSL 120
  121 YKILKTMKDK GAKKTFLKSL VVDSEGQIRY AKE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term Confidence Notes
binding 1.72893576328611 bayes_pls_golite062009
nucleic acid binding 1.69485293197742 bayes_pls_golite062009
DNA binding 1.56529962350735 bayes_pls_golite062009
transcription regulator activity 1.34618935906821 bayes_pls_golite062009
transcription factor activity 0.482168429405299 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [68-153]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KQKQKQQQKQ QQKQHQHQPV ATPAKKVEKP VIKKAEKVEK TSNGIELHKG KSLYKILKTM  60
   61 KDKGAKKTFL KSLVVDSEGQ IRYAKE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle