| Protein: | RAD18 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 487 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAD18.
| Description | E-value | Query Range |
Subject Range |
|
|
305.0 | [0..4] | [453..6] |
|
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305.0 | [0..4] | [453..6] |
|
|
257.0 | [0..13] | [335..126] |
|
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256.0 | [0..13] | [298..64] |
|
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253.0 | [0..14] | [302..1] |
|
|
249.0 | [0..5] | [429..11] |
|
Region A: Residues: [1-100] |
1 11 21 31 41 51
| | | | | |
1 MDHQITTASD FTTTSIPSLY QLDTLLRCHI CKDFLKVPVL TPCGHTFCSL CIRTHLNNQP 60
61 NCPLCLFEFR ESLLRSEFLV SEIIQSYTSL RSSLLDALRI
|
| Detection Method: |  |
| Confidence: | 55.70927 |
| Match: | 1jm7A |
| Description: | brca1 RING domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [101-142] |
1 11 21 31 41 51
| | | | | |
1 PKPTPVPENE EVPGPENSSW IELISESESD SVNAADDDLQ IV
|
| Detection Method: | |
| Confidence: | 2.39794 |
| Match: | 1freA |
| Description: | XNF7 BBOX, DEVELOPMENTAL PROTEIN, PH 7.5, 30 C, WITH ZINC, NMR, 1 STRUCTURE |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [143-266] |
1 11 21 31 41 51
| | | | | |
1 ATSERKLAKR SMTDILPLSS KPSKRNFAMF RSERIKKKSK PNEQMAQCPI CQQFYPLKAL 60
61 EKTHLDECLT LQSLGKKPKI STTFPTESNP HNKSSSRFKV RTPEVDKSSC GETSHVDKYL 120
121 NSMM
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.465 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.465 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.359 | d.58.55 | Description not found. |
| View | Download | 0.339 | a.74.1 | Cyclin-like |
| View | Download | 0.324 | c.48.1 | TK C-terminal domain-like |
| View | Download | 0.320 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.319 | c.23.12 | Formate/glycerate dehydrogenase catalytic domain-like |
| View | Download | 0.314 | a.118.8 | TPR-like |
| View | Download | 0.230 | a.29.4 | RecG, N-terminal domain |
|
Region A: Residues: [267-343] |
1 11 21 31 41 51
| | | | | |
1 SAEHQRLPKI NFTSMTQSQI KQKLSSLGLS TNGTRQNMIK RYNHYEMLWN SNFCDSLEPV 60
61 DEAELKRQLL SWDVSHN
|
| Detection Method: | |
| Confidence: | 9.055517 |
| Match: | PF02037 |
| Description: | SAP domain |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.562 | N/A | N/A | a.140.3 | Rho termination factor, N-terminal domain |
| View | Download | 0.557 | N/A | N/A | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.545 | N/A | N/A | a.112.1 | Description not found. |
| View | Download | 0.545 | N/A | N/A | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
| View | Download | 0.543 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.536 | N/A | N/A | a.112.1 | Description not found. |
| View | Download | 0.536 | N/A | N/A | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
| View | Download | 0.475 | N/A | N/A | a.64.1 | Saposin |
| View | Download | 0.439 | N/A | N/A | a.112.1 | Description not found. |
| View | Download | 0.393 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
|
Region A: Residues: [344-487] |
1 11 21 31 41 51
| | | | | |
1 KTPQNSSNKG GISKLMIMKS NGKSSSYRKL LENFKNDKFN RKGWMVMFRK DFARLIREAK 60
61 MKIKTGSSDS SGSVGHSNDG DGVEKVQSDQ GTEDQQMEKD QDTVINEDRV AGERNLPNED 120
121 STDADLSREL MDLNEYSKDP PGNN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.338 | a.4.1 | Homeodomain-like |
| View | Download | 0.320 | c.23.1 | CheY-like |
| View | Download | 0.319 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.319 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.298 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.298 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.275 | a.40.3 | Description not found. |
| View | Download | 0.216 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
