YRC Public Data Repository - Protein Structure Prediction

Protein:	YCR061W
Organism:	Saccharomyces cerevisiae
Length:	631 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCR061W.

Description	E-value	Query Range	Subject Range
YBH6_SCHPO - Uncharacterized membrane protein C3B8.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=S... SPBC3B8.06 - conserved fungal protein	729.0	[0..102]	[622..29]
gi\|49641727 - gi\|49641727\|emb\|CAH01445.1\| KLLA0C08866p [Kluyveromyces lactis] gi\|50305269, gi\|... - gi\|50305269\|ref\|XP_452594.1\| unnamed protein product [Kluyveromyces lactis], gi\|49641727\|emb\|CAH0144...	518.0	[0..8]	[623..7]
gi\|50292375, gi\|... - gi\|50292375\|ref\|XP_448620.1\| unnamed protein product [Candida glabrata], gi\|49527932\|emb\|CAG61583.1\|... gi\|49527932 - gi\|49527932\|emb\|CAG61583.1\| unnamed protein product [Candida glabrata]	509.0	[0..2]	[623..1]
gi\|44980484 - gi\|44980484\|gb\|AAS50417.1\| AAR052Cp [Ashbya gossypii ATCC 10895] gi\|44980484, gi\|... - gi\|45184875\|ref\|NP_982593.1\| AAR052Cp [Ashbya gossypii ATCC 10895], gi\|44980484\|gb\|AAS50417.1\| AAR05...	420.0	[0..53]	[621..36]
gi\|68465404, gi\|... - gi\|68465404\|ref\|XP_723401.1\| hypothetical protein CaO19.12373 [Candida albicans SC5314], gi\|68465023... orf19.4907, orf1... - orf19.4907 CGDID:CAL0006205 Assembly 19, Contig19-10215 (409086, 407269) CDS, reverse complemented, ...	402.0	[0..23]	[623..18]
gi\|50424667, gi\|... - gi\|50424667\|ref\|XP_460923.1\| hypothetical protein DEHA0F13981g [Debaryomyces hansenii CBS767], gi\|49...	401.0	[0..49]	[625..19]
gi\|50553480, gi\|... - gi\|50553480\|ref\|XP_504151.1\| YALI0E19558p [Yarrowia lipolytica], gi\|49650020\|emb\|CAG79746.1\| unnamed... gi\|49650020 - gi\|49650020\|emb\|CAG79746.1\| YALI0E19558p [Yarrowia lipolytica]	372.0	[0..63]	[628..93]
gi\|28921253, gi\|... - gi\|32421421\|ref\|XP_331154.1\| hypothetical protein [Neurospora crassa], gi\|28921253\|gb\|EAA30563.1\| co... gi\|85093967 - gi\|85093967\|ref\|XP_959799.1\| hypothetical protein NCU02378 [Neurospora crassa OR74A]	328.0	[0..75]	[625..44]
gi\|90306721, gi\|... - gi\|90306721\|gb\|EAS36352.1\| hypothetical protein CIMG_01706 [Coccidioides immitis RS], gi\|119194663\|r...	313.0	[0..67]	[625..1]
gi\|27803056, gi\|... - gi\|27803056\|emb\|CAD60759.1\| unnamed protein product [Podospora anserina], gi\|188219299\|emb\|CAP49279.... gi\|189091892 - gi\|189091892\|ref\|XP_001929779.1\| [Podospora anserina]	313.0	[0..75]	[622..3]

Back

Predicted Domain #1

Region A:
Residues: [1-493]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRFVSILSL FGCAATLVTA HDDMDMDMDM DMDMDMNIDT TTSQSIDVSS TASIVPVPHE  60
   61 PKHLHGLPIL QSPSLTPAER LYWENYNTTT YFTTQAGNRS ALRYHIITLL LVAFVLYPVS 120
  121 LALSAARSRW YLPLLFVNLC ICISSVMALS VFKNTFPEED WYAHNIYGTT SVLLLVFMLV 180
  181 HFFAAVLSVP VSLASKKEYR PVDTIPLNDL ESTPVMVNSA RGSPSPSSNR DTLFSLSSDT 240
  241 TTATATNNNK RRRAEGEDEG DNTSNHDTLR DEDYDNDDDE IASIEAPPLL PQDIPVFRIL 300
  301 FTNTKYQMLA AHLSCVANVV FHMLTYPLFM YIFVDLIIGF AVGNLLGKGI RIFNLLAHWI 360
  361 KGGVFFTLGV VSLARYCGFA AKYGWAWNNI SFTSQLTQTR SSNLLFRFAP AGTFTMEFVE 420
  421 SFLIFFYGST NIFLEHLAGN GGAWTAKDLQ HVSIAFMFIG TGLCGLLTEY KLNHWRFEHA 480
  481 RKRPQTDVVA ATP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [494-631]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GYSPNPFPAF TIFWTGILMS QHAQSSQFST TIHTQWGYLL SYGSFFRLLT FLILFLVPNT  60
   61 NSAASKPFTE LITSFCLLCG GLVFMESTDQ SIEAMEYRGF TPMFTFNLSV GFVSLLMAWE 120
  121 MILFIWKDWL IKTRKTSL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits