YRC Public Data Repository - Protein Structure Prediction

Protein:	SLM5
Organism:	Saccharomyces cerevisiae
Length:	492 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SLM5.

Description	E-value	Query Range	Subject Range
SYN_YERPS - Asparagine--tRNA ligase OS=Yersinia pseudotuberculosis GN=asnS PE=3 SV=1 SYN_YERP3 - Asparagine--tRNA ligase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=asnS PE=3 ... SYN_YERPE - Asparagine--tRNA ligase OS=Yersinia pestis GN=asnS PE=3 SV=1 SYN_YERPA - Asparagine--tRNA ligase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=asnS PE=3 SV=1 SYN_YERPN - Asparagine--tRNA ligase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=asnS PE=3 SV=1 gi\|21959647, gi\|... - gi\|22126636\|ref\|NP_670059.1\| asparaginyl-tRNA synthetase [Yersinia pestis KIM], gi\|21959647\|gb\|AAM86... SYN_YERPS - Asparagine--tRNA ligase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=asnS PE=3 SV=1 gi\|45441008, gi\|... - gi\|45441008\|ref\|NP_992547.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Microtus str. 91001... gi\|149366669, gi... - gi\|149366669\|ref\|ZP_01888703.1\| asparaginyl-tRNA synthetase [Yersinia pestis CA88-4125], gi\|14929104... gi\|15979461, gi\|... - gi\|218928560\|ref\|YP_002346435.1\| asparaginyl-tRNA synthetase [Yersinia pestis CO92], gi\|16121692\|ref... SYN_YERPP - Asparagine--tRNA ligase OS=Yersinia pestis (strain Pestoides F) GN=asnS PE=3 SV=1 gi\|229841386, gi... - gi\|229841386\|ref\|ZP_04461545.1\| asparaginyl tRNA synthetase [Yersinia pestis biovar Orientalis str. ... gi\|229843491, gi... - gi\|229843491\|ref\|ZP_04463637.1\| asparaginyl tRNA synthetase [Yersinia pestis biovar Orientalis str. ... gi\|165938931, gi... - gi\|165938931\|ref\|ZP_02227484.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. ... gi\|162419705, gi... - gi\|77636026\|ref\|ZP_00798104.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Yersinia pestis Angol... gi\|165924584, gi... - gi\|165924584\|ref\|ZP_02220416.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. ... gi\|167050713, gi... - gi\|167400005\|ref\|ZP_02305523.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. UG0... gi\|166207346, gi... - gi\|166211575\|ref\|ZP_02237610.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. B42... gi\|167057132, gi... - gi\|167424283\|ref\|ZP_02316036.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str.... gi\|166962464, gi... - gi\|167419723\|ref\|ZP_02311476.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. ... gi\|186697881, gi... - gi\|186894855\|ref\|YP_001871967.1\| asparaginyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+], gi... gi\|169751407, gi... - gi\|170024873\|ref\|YP_001721378.1\| asparaginyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII], gi...	0.0	[30..489]	[16..464]
SYN_SALTI - Asparagine--tRNA ligase OS=Salmonella typhi GN=asnS PE=3 SV=3 gi\|29142358, gi\|... - gi\|29142358\|ref\|NP_805700.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica serova... SYN_SALTI - Asparaginyl-tRNA synthetase OS=Salmonella typhi GN=asnS PE=3 SV=3 gi\|16759869 - gi\|16759869\|ref\|NP_455486.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica serova... SYN_SALPA - Asparagine--tRNA ligase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=asnS PE=3 SV=1 SYN_SALPA - Asparagine--tRNA ligase OS=Salmonella paratyphi A GN=asnS PE=3 SV=1 gi\|213581037 - gi\|213581037\|ref\|ZP_03362863.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|213612501 - gi\|213612501\|ref\|ZP_03370327.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|213999484 - gi\|213999484\|ref\|ZP_03410219.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|238913227 - gi\|238913227\|ref\|ZP_04657064.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|205271988, gi... - gi\|205352207\|ref\|YP_002226008.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica se... gi\|206708194, gi... - gi\|207856391\|ref\|YP_002243042.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica se... gi\|213162084 - gi\|213162084\|ref\|ZP_03347794.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|213424614 - gi\|213424614\|ref\|ZP_03357397.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|194470581, gi... - gi\|194470581\|ref\|ZP_03076565.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica sero... gi\|194710132, gi... - gi\|194734630\|ref\|YP_002114055.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|197094351, gi... - gi\|197362874\|ref\|YP_002142511.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica se... gi\|197937846, gi... - gi\|198243330\|ref\|YP_002214926.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|205332405, gi... - gi\|205332405\|gb\|EDZ19169.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ... gi\|168237106, gi... - gi\|197289886\|gb\|EDY29247.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ... gi\|195631055, gi... - gi\|195631055\|gb\|EDX49641.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ... gi\|205341479, gi... - gi\|205341479\|gb\|EDZ28243.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ...	0.0	[30..489]	[16..464]
gi\|194450065, gi... - gi\|194450065\|ref\|YP_002044994.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica se... SYN_SALTY - Asparagine--tRNA ligase OS=Salmonella typhimurium GN=asnS PE=3 SV=2 gi\|197249609, gi... - gi\|197249609\|ref\|YP_002145920.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica ser... SYN_SALTY - Asparagine--tRNA ligase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=asnS PE=3... gi\|200390273, gi... - gi\|200390273\|ref\|ZP_03216884.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica sero... SYN_SALTY - Asparaginyl-tRNA synthetase OS=Salmonella typhimurium GN=asnS PE=3 SV=2 gi\|167993358, gi... - gi\|205328543\|gb\|EDZ15307.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ... lcl\|NC_016856.1_... - [gene=asnS] [protein=asparaginyl-tRNA synthetase] [protein_id=YP_005236722.1] [location=complement(1... gi\|205337229, gi... - gi\|205337229\|gb\|EDZ23993.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ... gi\|205346905, gi... - gi\|205346905\|gb\|EDZ33536.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ... gi\|194443471, gi... - gi\|194443471\|ref\|YP_002040200.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|167552996, gi... - gi\|205322466\|gb\|EDZ10305.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ...	0.0	[30..489]	[16..464]
gi\|188488703, gi... - gi\|75512086\|ref\|ZP_00734671.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Escherichia coli 5363... gi\|227838856, gi... - gi\|227884104\|ref\|ZP_04001909.1\| asparagine--tRNA ligase [Escherichia coli 83972], gi\|227838856\|gb\|EE... SYN_SHISS - Asparagine--tRNA ligase OS=Shigella sonnei (strain Ss046) GN=asnS PE=3 SV=1 gi\|238860020, gi... - gi\|238900188\|ref\|YP_002925984.1\| asparaginyl tRNA synthetase [Escherichia coli BW2952], gi\|238860020... gi\|75241005, gi\|... - gi\|75241005\|ref\|ZP_00724894.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Escherichia coli F11]... gi\|251784472, gi... - gi\|251784472\|ref\|YP_002998776.1\| hypothetical protein B21_00941 [Escherichia coli BL21], gi\|24237674... gi\|193064676, gi... - gi\|75257353\|ref\|ZP_00728869.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Escherichia coli E22]... gi\|254287852, gi... - gi\|254287852\|ref\|YP_003053600.1\| asparaginyl-tRNA synthetase [Escherichia coli BL21(DE3)], gi\|253977... gi\|56479774, gi\|... - gi\|56479774\|ref\|NP_706849.2\| asparaginyl-tRNA synthetase [Shigella flexneri 2a str. 301], gi\|5638332... gi\|253972945, gi... - gi\|254161044\|ref\|YP_003044152.1\| asparaginyl-tRNA synthetase [Escherichia coli B str. REL606], gi\|25... SYN_ECOL6 - Asparagine--tRNA ligase OS=Escherichia coli O6 GN=asnS PE=3 SV=2 SYN_SHIBS - Asparagine--tRNA ligase OS=Shigella boydii serotype 4 (strain Sb227) GN=asnS PE=3 SV=1 gi\|187733912, gi... - gi\|75178257\|ref\|ZP_00698311.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Shigella boydii BS512... EG10094 - asparaginyl tRNA synthetase / Asparagine--tRNA ligase SYN_ECO24 - Asparagine--tRNA ligase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=asnS PE=3 SV=1 gi\|83585873, gi\|... - gi\|83585873\|ref\|ZP_00924513.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Escherichia coli 101-... gi\|75214730, gi\|... - gi\|75214730\|ref\|ZP_00713235.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Escherichia coli E110... gi\|169888423, gi... - gi\|170080588\|ref\|YP_001729908.1\| asparaginyl tRNA synthetase [Escherichia coli str. K-12 substr. DH1... gi\|75229864, gi\|... - gi\|75229864\|ref\|ZP_00716387.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Escherichia coli B7A]... gi\|162317582 - gi\|162317582\|ref\|YP_852061.2\| asparaginyl-tRNA synthetase [Escherichia coli APEC O1] SYN_ECOHS - Asparagine--tRNA ligase OS=Escherichia coli O9:H4 (strain HS) GN=asnS PE=3 SV=1 gi\|209918181, gi... - gi\|209918181\|ref\|YP_002292265.1\| asparaginyl-tRNA synthetase [Escherichia coli SE11], gi\|209911440\|d... gi\|194413566, gi... - gi\|75210379\|ref\|ZP_00710535.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Escherichia coli B171... gi\|170520584, gi... - gi\|170682866\|ref\|YP_001744240.1\| asparagine tRNA synthetase [Escherichia coli SMS-3-5], gi\|170520584... SYN_ECOLC - Asparagine--tRNA ligase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=asnS PE=3 SV=1 gi\|218360285, gi... - gi\|218553517\|ref\|YP_002386430.1\| asparaginyl-tRNA synthetase [Escherichia coli IAI1], gi\|218360285\|e... gi\|215264127, gi... - gi\|215486055\|ref\|YP_002328486.1\| asparaginyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69... gi\|218426337, gi... - gi\|218688773\|ref\|YP_002396985.1\| asparaginyl-tRNA synthetase [Escherichia coli ED1a], gi\|218426337\|e... SYN_SHIFL - Asparagine--tRNA ligase OS=Shigella flexneri GN=asnS PE=3 SV=2 gi\|218557835, gi... - gi\|218557835\|ref\|YP_002390748.1\| asparaginyl-tRNA synthetase [Escherichia coli S88], gi\|218364604\|em... SYN_ECOLI - Asparaginyl-tRNA synthetase (EC 6.1.1.22) (Asparagine--tRNA ligase) (AsnRS) - Escherichia coli gi\|218700551, gi... - gi\|218700551\|ref\|YP_002408180.1\| asparaginyl-tRNA synthetase [Escherichia coli IAI39], gi\|218370537\|... SYN_ECOL6 - Asparagine--tRNA ligase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=asnS PE=3 ... gi\|218351137, gi... - gi\|218694405\|ref\|YP_002402072.1\| asparaginyl-tRNA synthetase [Escherichia coli 55989], gi\|218351137\|... gi\|30062465, gi\|... - gi\|30062465\|ref\|NP_836636.1\| asparaginyl-tRNA synthetase [Shigella flexneri 2a str. 2457T], gi\|30040... EG10094 - asparaginyl tRNA synthetase / Asparagine--tRNA ligase gi\|124499411, gi... - gi\|124530124\|ref\|ZP_01700894.1\| asparaginyl-tRNA synthetase [Escherichia coli B], gi\|124499411\|gb\|EA... gi\|218431455, gi... - gi\|218704358\|ref\|YP_002411877.1\| asparaginyl-tRNA synthetase [Escherichia coli UMN026], gi\|218431455... gi\|1651455, gi\|8... - gi\|89107780\|ref\|AP_001560.1\| asparaginyl tRNA synthetase [Escherichia coli str. K-12 substr. W3110],... SYN_ECOUT - Asparagine--tRNA ligase OS=Escherichia coli (strain UTI89 / UPEC) GN=asnS PE=3 SV=1 SYN_ECOL5 - Asparagine--tRNA ligase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=asnS PE=3 SV=1 SYN_SHIF8 - Asparagine--tRNA ligase OS=Shigella flexneri serotype 5b (strain 8401) GN=asnS PE=3 SV=1	0.0	[30..489]	[16..464]
gi\|13360472, gi\|... - gi\|15830267\|ref\|NP_309040.1\| asparaginyl-tRNA synthetase [Escherichia coli O157:H7 str. Sakai], gi\|1... SYN_ECO57 - Asparagine--tRNA ligase OS=Escherichia coli O157:H7 GN=asnS PE=3 SV=2 gi\|25293009, gi\|... - pir\|\|C85619 asparagine tRNA synthetase [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|15800791, gi\|... - gi\|15800791\|ref\|NP_286805.1\| asparaginyl-tRNA synthetase [Escherichia coli O157:H7 EDL933], gi\|12514... gi\|209158426, gi... - gi\|209397026\|ref\|YP_002269602.1\| asparagine tRNA synthetase [Escherichia coli O157:H7 str. EC4115], ... gi\|217325811, gi... - gi\|217325811\|ref\|ZP_03441895.1\| asparagine tRNA synthetase [Escherichia coli O157:H7 str. TW14588], ... gi\|168787362, gi... - gi\|189372735\|gb\|EDU91151.1\| asparagine tRNA synthetase [Escherichia coli O157:H7 str. EC869], gi\|168... gi\|195939655 - gi\|195939655\|ref\|ZP_03085037.1\| asparaginyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4024] gi\|208815310, gi... - gi\|208815310\|ref\|ZP_03256489.1\| asparagine tRNA synthetase [Escherichia coli O157:H7 str. EC4045], g... gi\|254591530, gi... - gi\|254792130\|ref\|YP_003076967.1\| asparaginyl tRNA synthetase [Escherichia coli O157:H7 str. TW14359]... gi\|208738133, gi... - gi\|208822648\|ref\|ZP_03262967.1\| asparagine tRNA synthetase [Escherichia coli O157:H7 str. EC4042], g... gi\|168762930, gi... - gi\|189366782\|gb\|EDU85198.1\| asparagine tRNA synthetase [Escherichia coli O157:H7 str. EC4501], gi\|16... gi\|168769928, gi... - gi\|189361160\|gb\|EDU79579.1\| asparagine tRNA synthetase [Escherichia coli O157:H7 str. EC4486], gi\|16... gi\|168776214, gi... - gi\|187768340\|gb\|EDU32184.1\| asparagine tRNA synthetase [Escherichia coli O157:H7 str. EC4196], gi\|16... gi\|168783976, gi... - gi\|188998770\|gb\|EDU67756.1\| asparagine tRNA synthetase [Escherichia coli O157:H7 str. EC4076], gi\|16... gi\|188014709, gi... - gi\|188014709\|gb\|EDU52831.1\| asparagine tRNA synthetase [Escherichia coli O157:H7 str. EC4113], gi\|16... gi\|189355907, gi... - gi\|189355907\|gb\|EDU74326.1\| asparagine tRNA synthetase [Escherichia coli O157:H7 str. EC4401], gi\|16...	0.0	[30..489]	[16..464]
gi\|12720918, gi\|... - gi\|15602508\|ref\|NP_245580.1\| asparaginyl-tRNA synthetase [Pasteurella multocida subsp. multocida str...	0.0	[30..489]	[21..469]
gi\|25293068 - pir\|\|AC2263 asparaginyl-tRNA synthetase [imported] - Nostoc sp. (strain PCC 7120) SYN_NOSS1 - Asparagine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=asnS PE=3 SV=1	0.0	[14..492]	[1..463]
gi\|221321410 - gi\|221321410\|ref\|ZP_03602704.1\| lysyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. SMY] gi\|221317147 - gi\|221317147\|ref\|ZP_03598441.1\| lysyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. JH642] gi\|221312214 - gi\|221312214\|ref\|ZP_03594019.1\| lysyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. NCIB 3... SYK_BACSU - Lysine--tRNA ligase OS=Bacillus subtilis (strain 168) GN=lysS PE=3 SV=1 SYK_BACSU - Lysine--tRNA ligase OS=Bacillus subtilis GN=lysS PE=3 SV=1	0.0	[3..488]	[27..499]
SLM5 - Mitochondrial asparaginyl-tRNA synthetase gi\|151943844 - gi\|151943844\|gb\|EDN62144.1\| conserved protein [Saccharomyces cerevisiae YJM789] gi\|190406459 - gi\|190406459\|gb\|EDV09726.1\| asparaginyl-tRNA synthetase, mitochondrial precursor [Saccharomyces cere... SYNM_YEAST - Asparagine--tRNA ligase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=S...	0.0	[1..492]	[1..492]
SYK_BACHD - Lysine--tRNA ligase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 /... SYK_BACHD - Lysyl-tRNA synthetase OS=Bacillus halodurans GN=lysS PE=3 SV=1	0.0	[5..488]	[25..495]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFHAFTFLKG GRFYSSLTVK SLYEQVHHTS HDPISINGWI KSIRLLKRIA FLDLQDGTSV  60
   61 NPLRIVIPLT NTDEVQFLKI LKTGQTLSIS NATWQSTPNR KQPFELQIKN PVKSIKLVGP 120
  121 VSENYPLQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	861.0103
Match:	1lkhA_
Description:	No description for 1lkhA_ was found.

Predicted Domain #2

Region A:
Residues: [129-492]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKYQTLRYLR SLPTLKYRTA YLSAILRLRS FVEFQFMLYF QKNHFTKVSP PILTSNDCEG  60
   61 AGELFQVSTN TSPTASSYFG KPTYLTVSTQ LHLEILALSL SRCWTLSPCF RAEKSDTPRH 120
  121 LSEFWMLEVE MCFVNSVNEL TSFVETTIKH IIKACIDNQQ ELLPKQFISS QENNASSELS 180
  181 INQETQQIKT RWEDLINEKW HNITYTNAIE ILKKRHNEVS HFKYEPKWGQ PLQTEHEKFL 240
  241 AGEYFKSPVF VTDYPRLCKP FYMKQNSTPD DTVGCFDLLV PGMGEIIGGS LREDDYDKLC 300
  301 REMKARGMNR SGELDWYVSL RKEGSAPHGG FGLGFERFIS YLYGNHNIKD AIPFYRTSAE 360
  361 SIDF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	861.0103
Match:	1lkhA_
Description:	No description for 1lkhA_ was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits