YRC Public Data Repository - Protein Structure Prediction

Protein:	ADY2
Organism:	Saccharomyces cerevisiae
Length:	283 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ADY2.

Description	E-value	Query Range	Subject Range
gi\|190406445 - gi\|190406445\|gb\|EDV09712.1\| transmembrane protein [Saccharomyces cerevisiae RM11-1a] ADY2_YEAST - Accumulation of dyads protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ADY2 PE=... ADY2 - Acetate transporter required for normal sporulation; phosphorylated in mitochondria ORFP:2449 - YCR010C, Contig c87 5118-5969 reverse complement gi\|151943830 - gi\|151943830\|gb\|EDN62130.1\| accumulation of dyads involved protein [Saccharomyces cerevisiae YJM789]	5.0E-94	[1..283]	[1..283]
GPR1_YARLI - Glyoxylate pathway regulator OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GPR1 PE=1 SV=3 GPR1_YARLI - Glyoxylate pathway regulator OS=Yarrowia lipolytica GN=GPR1 PE=1 SV=3	7.0E-84	[21..280]	[8..269]
MUG86_SCHPO - Meiotically up-regulated gene 86 protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=m... mug86 - acetate transporter	8.0E-61	[67..273]	[70..281]
gi\|108810505, gi... - gi\|229900694\|ref\|ZP_04515818.1\| conserved inner membrane protein associated with acetate transport [... gi\|22127581, gi\|... - gi\|22127581\|ref\|NP_671004.1\| hypothetical protein y3707 [Yersinia pestis KIM], gi\|21960688\|gb\|AAM872... gi\|25331232 - pir\|\|AH0057 probable membrane protein YPO0467 [imported] - Yersinia pestis (strain CO92) gi\|165936593, gi... - gi\|89102679\|ref\|ZP_01175295.1\| COG1584: Predicted membrane protein [Yersinia pestis biovar Orientali... gi\|165920813, gi... - gi\|165927351\|ref\|ZP_02223183.1\| gpr1/fun34/yaaH family protein [Yersinia pestis biovar Orientalis st... gi\|16120796, gi\|... - gi\|218927664\|ref\|YP_002345539.1\| hypothetical protein YPO0467 [Yersinia pestis CO92], gi\|16120796\|re... gi\|108810051, gi... - gi\|108810051\|ref\|YP_653967.1\| hypothetical protein YPA_4061 [Yersinia pestis Antiqua], gi\|108781964\|... gi\|152962063, gi... - gi\|77631596\|ref\|ZP_00794182.1\| COG1584: Predicted membrane protein [Yersinia pseudotuberculosis IP 3... gi\|149289905, gi... - gi\|150260497\|ref\|ZP_01917225.1\| putative membrane protein [Yersinia pestis CA88-4125], gi\|149289905\|... gi\|145600419, gi... - gi\|145600419\|ref\|YP_001164495.1\| hypothetical protein YPDSF_3164 [Yersinia pestis Pestoides F], gi\|1... gi\|229836950, gi... - gi\|229836950\|ref\|ZP_04457115.1\| conserved inner membrane protein associated with acetate transport [... gi\|229840354, gi... - gi\|229840354\|ref\|ZP_04460513.1\| conserved inner membrane protein associated with acetate transport [... gi\|229842434, gi... - gi\|229842434\|ref\|ZP_04462589.1\| conserved inner membrane protein associated with acetate transport [... gi\|166211974, gi... - gi\|166211974\|ref\|ZP_02238009.1\| gpr1/fun34/yaaH family protein [Yersinia pestis biovar Antiqua str. ... gi\|165992017, gi... - gi\|166008678\|ref\|ZP_02229576.1\| gpr1/fun34/yaaH family protein [Yersinia pestis biovar Antiqua str. ... gi\|166963225, gi... - gi\|167419231\|ref\|ZP_02310984.1\| gpr1/fun34/yaaH family protein [Yersinia pestis biovar Orientalis st... gi\|167401655, gi... - gi\|167401655\|ref\|ZP_02307149.1\| gpr1/fun34/yaaH family protein [Yersinia pestis biovar Antiqua str. ... gi\|167468975 - gi\|167468975\|ref\|ZP_02333679.1\| gpr1/fun34/yaaH family protein [Yersinia pestis FV-1] gi\|167426051, gi... - gi\|167426051\|ref\|ZP_02317804.1\| gpr1/fun34/yaaH family protein [Yersinia pestis biovar Mediaevalis s... gi\|162421810, gi... - gi\|77635670\|ref\|ZP_00797752.1\| COG1584: Predicted membrane protein [Yersinia pestis Angola], gi\|1624... gi\|170025810, gi... - gi\|170025810\|ref\|YP_001722315.1\| hypothetical protein YPK_3595 [Yersinia pseudotuberculosis YPIII], ...	6.0E-56	[85..279]	[4..192]
gi\|197752925, gi... - gi\|254285488\|ref\|ZP_04960452.1\| conserved hypothetical protein [Vibrio cholerae AM-19226], gi\|197752... gi\|229608634, gi... - gi\|229608634\|ref\|YP_002879282.1\| hypothetical protein VCD_003556 [Vibrio cholerae MJ-1236], gi\|22937... gi\|229333874, gi... - gi\|229530100\|ref\|ZP_04419490.1\| hypothetical protein VCG_003212 [Vibrio cholerae 12129(1)], gi\|22933... gi\|229338997, gi... - gi\|229525416\|ref\|ZP_04414821.1\| hypothetical protein VCA_003042 [Vibrio cholerae bv. albensis VL426]... gi\|229339771, gi... - gi\|229523408\|ref\|ZP_04412815.1\| hypothetical protein VIF_000268 [Vibrio cholerae TM 11079-80], gi\|22... gi\|229344549, gi... - gi\|229517834\|ref\|ZP_04407278.1\| hypothetical protein VCC_001858 [Vibrio cholerae RC9], gi\|229344549\|... gi\|229513091, gi... - gi\|229513091\|ref\|ZP_04402557.1\| hypothetical protein VCB_000736 [Vibrio cholerae TMA 21], gi\|2293499... gi\|229505616, gi... - gi\|229505616\|ref\|ZP_04395126.1\| hypothetical protein VCF_000827 [Vibrio cholerae BX 330286], gi\|2293... gi\|227008837, gi... - gi\|227080949\|ref\|YP_002809500.1\| putative Inner membrane protein [Vibrio cholerae M66-2], gi\|2270088... gi\|254847908, gi... - gi\|75831987\|ref\|ZP_00761246.1\| COG1584: Predicted membrane protein [Vibrio cholerae MO10], gi\|254847... gi\|227117144, gi... - gi\|75826119\|ref\|ZP_00755554.1\| COG1584: Predicted membrane protein [Vibrio cholerae O395], gi\|227117... gi\|125622420, gi... - gi\|75820924\|ref\|ZP_00750961.1\| COG1584: Predicted membrane protein [Vibrio cholerae V51], gi\|2542250... gi\|11354553 - pir\|\|F82282 conserved hypothetical protein VC0770 [imported] - Vibrio cholerae (strain N16961 serogr... gi\|121631508, gi... - gi\|75815735\|ref\|ZP_00746230.1\| COG1584: Predicted membrane protein [Vibrio cholerae V52], gi\|1217260... gi\|121585675, gi... - gi\|121585675\|ref\|ZP_01675470.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215500... gi\|153217376, gi... - gi\|153217376\|ref\|ZP_01951127.1\| conserved hypothetical protein [Vibrio cholerae 1587], gi\|124113607\|... gi\|153824644, gi... - gi\|153824644\|ref\|ZP_01977311.1\| conserved hypothetical protein [Vibrio cholerae MZO-2], gi\|149741862... gi\|124123844, gi... - gi\|153800555\|ref\|ZP_01955141.1\| conserved hypothetical protein [Vibrio cholerae MZO-3], gi\|124123844... gi\|148876238, gi... - gi\|153828284\|ref\|ZP_01980951.1\| putative membrane protein [Vibrio cholerae 623-39], gi\|148876238\|gb\|... gi\|153817283, gi... - gi\|153817283\|ref\|ZP_01969950.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12651... gi\|15640789, gi\|... - gi\|9655217\|gb\|AAF93935.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N169... gi\|229350677, gi... - gi\|229510712\|ref\|ZP_04400191.1\| hypothetical protein VCE_002119 [Vibrio cholerae B33], gi\|229350677\|...	3.0E-51	[86..280]	[4..185]
gi\|213426527 - gi\|213426527\|ref\|ZP_03359277.1\| hypothetical protein SentesTyphi_13475 [Salmonella enterica subsp. e... gi\|213581761 - gi\|213581761\|ref\|ZP_03363587.1\| hypothetical protein SentesTyph_11384 [Salmonella enterica subsp. en... gi\|16759002 - gi\|16759002\|ref\|NP_454619.1\| hypothetical protein STY0009 [Salmonella enterica subsp. enterica serov... gi\|214001210 - gi\|214001210\|ref\|ZP_03411945.1\| hypothetical protein Salmonellentericaenterica_12140 [Salmonella ent... gi\|224466374, gi... - gi\|224581847\|ref\|YP_002635645.1\| hypothetical protein SPC_0009 [Salmonella enterica subsp. enterica ... gi\|194404887, gi... - gi\|194446224\|ref\|YP_002039236.1\| membrane protein, GPR1/FUN34/yaaH family [Salmonella enterica subsp... lcl\|NC_016856.1_... - [gene=yaaH] [protein=hypothetical protein] [protein_id=YP_005235642.1] [location=complement(9376..99... gi\|197240838, gi... - gi\|197262583\|ref\|ZP_03162657.1\| membrane protein, GPR1/FUN34/yaaH family [Salmonella enterica subsp.... gi\|199604474, gi... - gi\|200387376\|ref\|ZP_03213988.1\| membrane protein, GPR1/FUN34/yaaH family [Salmonella enterica subsp.... gi\|213161466 - gi\|213161466\|ref\|ZP_03347176.1\| hypothetical protein Salmoneentericaenterica_16177 [Salmonella enter... gi\|205331415, gi... - gi\|205331415\|gb\|EDZ18179.1\| membrane protein, GPR1/FUN34/yaaH family [Salmonella enterica subsp. ent... gi\|205348734, gi... - gi\|205348734\|gb\|EDZ35365.1\| membrane protein, GPR1/FUN34/yaaH family [Salmonella enterica subsp. ent... gi\|168464467, gi... - gi\|195633000\|gb\|EDX51454.1\| membrane protein, GPR1/FUN34/yaaH family [Salmonella enterica subsp. ent... gi\|16763399, gi\|... - gi\|16763399\|ref\|NP_459014.1\| hypothetical protein STM0009 [Salmonella typhimurium LT2], gi\|16418502\|... gi\|29140552, gi\|... - gi\|29140552\|ref\|NP_803894.1\| hypothetical protein t0009 [Salmonella enterica subsp. enterica serovar... gi\|62126212, gi\|... - gi\|62178579\|ref\|YP_214996.1\| hypothetical protein SC0009 [Salmonella enterica subsp. enterica serova... gi\|25331233, gi\|... - gi\|25331233\|pir\|\|AB0503 conserved hypothetical protein STY0009 [imported] - Salmonella enterica subs...	5.0E-51	[86..279]	[5..186]

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Predicted Domain #1

Region A:
Residues: [1-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDKEQTSGN TDLENAPAGY YSSHDNDVNG VAEDERPSHD SLGKIYTGGD NNEYIYIGRQ  60
   61 KFLKSDLYQA FGGTLNPGLA PAPVHKFANP APLGLSAFAL TTFVLSMFNA RAQGITVPNV 120
  121 VVGCAMFYGG LVQLIAGIWE IALENTFGGT ALCSYGGFWL SFAAIYIPWF GILEAYEDNE 180
  181 SDLNNALGFY LLGWAIFTFG LTVCTMKSTV MFFLLFFLLA LTFLLLSIGH FANRLGVTRA 240
  241 GGVLGVVVAF IAWYNAYAGV ATKQNSYVLA RPFPLPSTER VIF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	165.920819
Match:	PF01184
Description:	GPR1/FUN34/yaaH family

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [85-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HKFANPAPLG LSAFALTTFV LSMFNARAQG ITVPNVVVGC AMFYGGLVQL IAGIWEIALE  60
   61 NTFGGTALCS YGGFWLSFAA IYIPWFGILE AYEDNESDLN NALGFYLLGW AIFTFGLTVC 120
  121 TMKSTVMFFL LFFLLALTFL LLSIGHFANR LGVTRAGGVL GVVVAFIAWY NAYAGVATKQ 180
  181 NSYVLARPFP LPSTERVIF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	141.721246
Match:	PF01184.10
Description:	No description for PF01184.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits